Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNA5SP478-201ENST00000364657 115 ntBASIC6.65□□□□□ -1.34
BDNFP23560 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.65□□□□□ -1.34
BDNFP23560 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
BDNFP23560 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.65□□□□□ -1.34
BDNFP23560 OR7E156P-201ENST00000400303 464 ntBASIC6.65□□□□□ -1.34
BDNFP23560 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 AC013470.3-201ENST00000420252 1194 ntBASIC6.65□□□□□ -1.34
BDNFP23560 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.65□□□□□ -1.34
BDNFP23560 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.65□□□□□ -1.34
BDNFP23560 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.65□□□□□ -1.34
BDNFP23560 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.65□□□□□ -1.34
BDNFP23560 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.65□□□□□ -1.34
BDNFP23560 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.65□□□□□ -1.34
BDNFP23560 AC010343.2-201ENST00000510162 224 ntBASIC6.65□□□□□ -1.34
BDNFP23560 BMPR1APS2-201ENST00000527904 1012 ntBASIC6.65□□□□□ -1.34
BDNFP23560 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC6.65□□□□□ -1.34
BDNFP23560 AC005363.1-201ENST00000530779 351 ntBASIC6.65□□□□□ -1.34
BDNFP23560 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.65□□□□□ -1.34
BDNFP23560 AC073916.1-201ENST00000545095 130 ntBASIC6.65□□□□□ -1.34
BDNFP23560 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.65□□□□□ -1.34
BDNFP23560 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.65□□□□□ -1.34
BDNFP23560 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.65□□□□□ -1.34
BDNFP23560 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
BDNFP23560 AC009120.3-201ENST00000563335 499 ntBASIC6.65□□□□□ -1.34
BDNFP23560 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.65□□□□□ -1.34
BDNFP23560 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.65□□□□□ -1.34
BDNFP23560 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.65□□□□□ -1.34
BDNFP23560 AC019131.2-201ENST00000609071 870 ntBASIC6.65□□□□□ -1.34
BDNFP23560 AC024255.1-201ENST00000614376 102 ntBASIC6.65□□□□□ -1.34
BDNFP23560 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.65□□□□□ -1.34
BDNFP23560 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
BDNFP23560 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.65□□□□□ -1.35
BDNFP23560 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
BDNFP23560 AC018717.1-201ENST00000457712 1505 ntBASIC6.65□□□□□ -1.35
BDNFP23560 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
BDNFP23560 CASC19-281ENST00000642118 1554 ntBASIC6.65□□□□□ -1.35
BDNFP23560 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.65□□□□□ -1.35
BDNFP23560 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.65□□□□□ -1.35
BDNFP23560 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.65□□□□□ -1.35
BDNFP23560 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
BDNFP23560 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 GUCY1B2-204ENST00000531898 1979 ntBASIC6.64□□□□□ -1.35
BDNFP23560 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 AL121950.1-201ENST00000624993 2077 ntBASIC6.64□□□□□ -1.35
BDNFP23560 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 AC132825.1-201ENST00000463573 2247 ntBASIC6.64□□□□□ -1.35
BDNFP23560 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
BDNFP23560 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
BDNFP23560 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
BDNFP23560 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
BDNFP23560 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
BDNFP23560 AC097721.1-201ENST00000427150 1253 ntBASIC6.64□□□□□ -1.35
BDNFP23560 Z85994.2-201ENST00000434327 452 ntBASIC6.64□□□□□ -1.35
BDNFP23560 MAPRE1P3-201ENST00000435438 796 ntBASIC6.64□□□□□ -1.35
BDNFP23560 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC6.64□□□□□ -1.35
BDNFP23560 HIGD1AP16-201ENST00000450986 258 ntBASIC6.64□□□□□ -1.35
BDNFP23560 VPS25P1-201ENST00000455691 508 ntBASIC6.64□□□□□ -1.35
BDNFP23560 AP002884.1-201ENST00000479691 655 ntBASIC6.64□□□□□ -1.35
BDNFP23560 RPL34P33-201ENST00000486062 334 ntBASIC6.64□□□□□ -1.35
BDNFP23560 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.64□□□□□ -1.35
BDNFP23560 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.64□□□□□ -1.35
BDNFP23560 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.64□□□□□ -1.35
BDNFP23560 AC008147.3-201ENST00000548666 354 ntBASIC6.64□□□□□ -1.35
BDNFP23560 AC002310.3-201ENST00000569728 723 ntBASIC6.64□□□□□ -1.35
BDNFP23560 AC022106.1-201ENST00000612834 766 ntBASIC6.64□□□□□ -1.35
BDNFP23560 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.64□□□□□ -1.35
BDNFP23560 EIF3EP1-201ENST00000433978 1316 ntBASIC6.64□□□□□ -1.35
BDNFP23560 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.64□□□□□ -1.35
BDNFP23560 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.64□□□□□ -1.35
BDNFP23560 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC6.64□□□□□ -1.35
BDNFP23560 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
BDNFP23560 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
BDNFP23560 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
BDNFP23560 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
BDNFP23560 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.64□□□□□ -1.35
BDNFP23560 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.64□□□□□ -1.35
BDNFP23560 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.64□□□□□ -1.35
BDNFP23560 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.64□□□□□ -1.35
BDNFP23560 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 AC027575.3-201ENST00000583058 2747 ntBASIC6.63□□□□□ -1.35
BDNFP23560 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
BDNFP23560 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.63□□□□□ -1.35
BDNFP23560 AC016745.2-201ENST00000608834 3443 ntBASIC6.63□□□□□ -1.35
BDNFP23560 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
BDNFP23560 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.63□□□□□ -1.35
BDNFP23560 OR11H13P-201ENST00000359695 979 ntBASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms