Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MIR6820-201ENST00000611508 62 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 AL049634.1-201ENST00000453770 1720 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 AC092070.2-203ENST00000598377 3644 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 U3.2-201ENST00000362981 210 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.67□□□□□ -1.5
COL5A1P20908 RPL35AP28-201ENST00000459730 331 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 OR2AO1P-201ENST00000476497 403 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 AC004815.1-201ENST00000484185 331 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.67□□□□□ -1.5
COL5A1P20908 RN7SL547P-201ENST00000490793 290 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 AC024558.1-201ENST00000505008 528 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.67□□□□□ -1.5
COL5A1P20908 MRPS16P1-201ENST00000523462 412 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.67□□□□□ -1.5
COL5A1P20908 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 AC074050.1-201ENST00000563247 211 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 AL445222.1-201ENST00000607259 628 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 AC007204.2-201ENST00000615022 616 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 AC136428.4-201ENST00000634254 1155 ntBASIC5.67□□□□□ -1.5
COL5A1P20908 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL5A1P20908 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC5.67□□□□□ -1.5
COL5A1P20908 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
COL5A1P20908 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC5.66□□□□□ -1.5
COL5A1P20908 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL5A1P20908 USP9YP3-201ENST00000434481 1766 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 AC006058.1-201ENST00000568686 5067 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 RNA5SP131-201ENST00000365452 119 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 AL360271.1-201ENST00000395679 510 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 RN7SKP125-201ENST00000410481 302 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 MYL6P5-201ENST00000412707 459 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.66□□□□□ -1.5
COL5A1P20908 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 AURKAPS1-201ENST00000451805 1212 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.66□□□□□ -1.5
COL5A1P20908 AC087360.1-201ENST00000518788 616 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.66□□□□□ -1.5
COL5A1P20908 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.66□□□□□ -1.5
COL5A1P20908 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.66□□□□□ -1.5
COL5A1P20908 AL512329.2-201ENST00000607350 548 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 AC073342.3-201ENST00000624211 193 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 AL596275.2-208ENST00000641192 594 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 SAMMSON-227ENST00000642114 1199 ntBASIC5.66□□□□□ -1.5
COL5A1P20908 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
COL5A1P20908 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC5.66□□□□□ -1.5
COL5A1P20908 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL5A1P20908 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL5A1P20908 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A1P20908 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A1P20908 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC5.65□□□□□ -1.5
COL5A1P20908 ATM-215ENST00000530958 5718 ntTSL 2 BASIC5.65□□□□□ -1.5
COL5A1P20908 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
COL5A1P20908 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.65□□□□□ -1.5
COL5A1P20908 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A1P20908 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A1P20908 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A1P20908 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A1P20908 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL5A1P20908 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.65□□□□□ -1.5
COL5A1P20908 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms