Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC092106.1-201ENST00000444291 373 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 RPS23P9-201ENST00000448848 438 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC134698.5-201ENST00000519444 336 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC137768.1-201ENST00000549998 553 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 MIR4311-201ENST00000580794 100 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC133644.2-201ENST00000608142 540 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC000068.2-201ENST00000608816 460 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC025574.2-201ENST00000615621 514 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 TEK-202ENST00000406359 3935 ntTSL 2 BASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AC008957.3-201ENST00000624112 2242 ntBASIC7.51□□□□□ -1.21
SHANK3Q9BYB0 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 AC119674.1-213ENST00000641177 1386 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 RN7SKP28-201ENST00000364770 305 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 RN7SKP213-201ENST00000410746 298 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 RPS26P13-201ENST00000419030 330 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 RAB28P2-201ENST00000454299 641 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 OR11J2P-201ENST00000555298 907 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 AL049872.1-201ENST00000556323 322 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 AC079075.1-201ENST00000559543 878 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 AC063977.5-201ENST00000601044 974 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 AP000346.3-201ENST00000622821 210 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 IMMTP1-201ENST00000435590 2219 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 MFSD8-219ENST00000641228 2559 ntBASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
SHANK3Q9BYB0 RNU1-77P-201ENST00000390868 162 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC013442.1-201ENST00000397347 228 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC023141.8-201ENST00000442554 208 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC079922.1-201ENST00000443291 359 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC092905.1-201ENST00000467527 949 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 RPL23AP40-201ENST00000487630 390 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 RPL15P21-201ENST00000495592 567 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 NMNAT1P5-201ENST00000559657 841 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 RBM22P12-201ENST00000567098 1255 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AP002505.2-201ENST00000623585 696 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 ACA64.4-201ENST00000459070 127 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AC126915.2-201ENST00000610957 190 ntBASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
SHANK3Q9BYB0 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 AL121768.1-201ENST00000613917 2544 ntBASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
SHANK3Q9BYB0 USP9YP3-201ENST00000434481 1766 ntBASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms