Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 SNORA38B-201ENST00000363524 131 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 RPL21P50-201ENST00000417698 477 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 H3F3BP1-201ENST00000440551 403 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 RN7SKP248-201ENST00000516278 305 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 RN7SKP238-201ENST00000516483 249 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AC004232.1-201ENST00000571388 208 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AL049840.6-201ENST00000604583 345 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AL138960.1-201ENST00000613838 513 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AP001264.1-201ENST00000620602 703 ntBASIC6.15□□□□□ -1.42
COL28A1Q2UY09 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL28A1Q2UY09 NEK2P4-201ENST00000425793 1329 ntBASIC6.15□□□□□ -1.43
COL28A1Q2UY09 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL28A1Q2UY09 AL512310.3-201ENST00000547023 1335 ntBASIC6.15□□□□□ -1.43
COL28A1Q2UY09 AC020658.2-201ENST00000559030 4020 ntBASIC6.15□□□□□ -1.43
COL28A1Q2UY09 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.15□□□□□ -1.43
COL28A1Q2UY09 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL28A1Q2UY09 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL28A1Q2UY09 AC022905.1-201ENST00000503430 3048 ntBASIC6.15□□□□□ -1.43
COL28A1Q2UY09 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 OLMALINC-203ENST00000641087 3779 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 RN7SKP162-201ENST00000363605 345 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 MIR130B-202ENST00000385018 82 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL355433.1-201ENST00000422804 300 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC245452.2-201ENST00000435222 392 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 ELOCP3-201ENST00000439303 348 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC093827.1-201ENST00000480094 861 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC083906.1-201ENST00000509298 406 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 ACTR6P1-201ENST00000514311 1104 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 RNU6-1334P-201ENST00000516032 105 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 RNA5SP362-201ENST00000516048 118 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC084337.1-201ENST00000524809 686 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC008055.1-201ENST00000547032 609 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC092332.1-201ENST00000563684 829 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC233702.7-202ENST00000582941 211 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 RN7SL787P-201ENST00000613000 284 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL354718.1-201ENST00000619764 589 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AL136531.3-201ENST00000624378 3658 ntBASIC6.14□□□□□ -1.43
COL28A1Q2UY09 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL28A1Q2UY09 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms