Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PPIAP27-201ENST00000453800 265 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 PFN1P8-201ENST00000497012 543 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.92□□□□□ -1.46
SHMT2P34897 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 AC093815.1-201ENST00000508637 280 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.92□□□□□ -1.46
SHMT2P34897 IGKV3D-25-201ENST00000519599 235 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.92□□□□□ -1.46
SHMT2P34897 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.92□□□□□ -1.46
SHMT2P34897 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.92□□□□□ -1.46
SHMT2P34897 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.92□□□□□ -1.46
SHMT2P34897 AC008507.3-201ENST00000585753 472 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 AL499605.1-201ENST00000604628 403 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 AL645933.2-201ENST00000606743 1207 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.92□□□□□ -1.46
SHMT2P34897 AC022164.1-201ENST00000568767 2673 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.92□□□□□ -1.46
SHMT2P34897 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 RBMY1HP-201ENST00000382759 1389 ntBASIC5.92□□□□□ -1.46
SHMT2P34897 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SHMT2P34897 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.91□□□□□ -1.46
SHMT2P34897 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.91□□□□□ -1.46
SHMT2P34897 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.91□□□□□ -1.46
SHMT2P34897 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SHMT2P34897 RNU105B-201ENST00000364478 208 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 OOSP1-201ENST00000398992 1270 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 SNORA11.5-201ENST00000408163 128 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC245096.1-201ENST00000413104 546 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.91□□□□□ -1.46
SHMT2P34897 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 SUMO2P8-201ENST00000434672 286 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC112187.1-201ENST00000455837 479 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC023194.2-201ENST00000465398 406 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 AC092865.4-201ENST00000477936 615 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AL035690.1-201ENST00000490892 383 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.91□□□□□ -1.46
SHMT2P34897 LSM3P4-201ENST00000502948 309 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 OR56A7P-201ENST00000524865 941 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AP003396.4-201ENST00000527574 265 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 BCAS2P1-201ENST00000528022 632 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.91□□□□□ -1.46
SHMT2P34897 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.91□□□□□ -1.46
SHMT2P34897 AC068768.2-201ENST00000602352 343 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC093388.1-201ENST00000609166 430 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 RN7SL261P-201ENST00000613441 282 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.91□□□□□ -1.46
SHMT2P34897 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 AL354854.1-201ENST00000455940 1363 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AC140134.1-201ENST00000511830 3544 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 AL731532.1-201ENST00000623972 4236 ntBASIC5.91□□□□□ -1.46
SHMT2P34897 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SHMT2P34897 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
SHMT2P34897 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHMT2P34897 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.9□□□□□ -1.46
SHMT2P34897 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHMT2P34897 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.9□□□□□ -1.46
SHMT2P34897 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHMT2P34897 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.9□□□□□ -1.46
SHMT2P34897 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.9□□□□□ -1.46
SHMT2P34897 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.9□□□□□ -1.46
SHMT2P34897 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SHMT2P34897 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.9□□□□□ -1.46
SHMT2P34897 CASC19-238ENST00000641523 1558 ntBASIC5.9□□□□□ -1.46
SHMT2P34897 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SHMT2P34897 RNA5SP375-201ENST00000362975 119 ntBASIC5.9□□□□□ -1.46
SHMT2P34897 RAB5CP1-201ENST00000395972 580 ntBASIC5.9□□□□□ -1.46
SHMT2P34897 AL096829.1-201ENST00000413677 457 ntBASIC5.9□□□□□ -1.46
SHMT2P34897 AC015977.1-201ENST00000418887 292 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms