Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR6721-201ENST00000617181 87 ntBASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
CHMP4AQ9BY43 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 TINAG-203ENST00000370869 782 ntTSL 3 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AC104297.1-201ENST00000393779 870 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 YWHAZP6-201ENST00000399764 738 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 VN1R12P-201ENST00000403778 876 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 VPS25P1-201ENST00000455691 508 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 OR9A1P-202ENST00000484361 945 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AC036111.2-201ENST00000533247 901 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AL845552.1-201ENST00000556820 323 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AP001542.1-201ENST00000591314 200 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 APOC2-205ENST00000592257 444 ntTSL 3 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AC073593.1-201ENST00000624500 411 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 AL353796.1-201ENST00000561542 3241 ntBASIC8.12□□□□□ -1.11
CHMP4AQ9BY43 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AL157702.1-201ENST00000398764 426 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 U3.43-201ENST00000410734 213 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 RCC2P2-201ENST00000422174 918 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AC021006.1-201ENST00000489849 553 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AC090958.1-201ENST00000511122 351 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 ZNF519P4-201ENST00000514008 125 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 EIF4A2P5-201ENST00000529914 499 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AC073916.1-201ENST00000545095 130 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AP001823.1-201ENST00000604056 1003 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AL008723.3-201ENST00000608926 449 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AC117490.2-201ENST00000610042 594 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AL683826.1-201ENST00000624104 627 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 AL357140.4-201ENST00000636827 412 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 VPS35P1-201ENST00000563400 1518 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 LRRC37A16P-202ENST00000586022 3725 ntBASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
CHMP4AQ9BY43 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms