Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 AC012020.1-201ENST00000624541 1728 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
SOX4Q06945 MIR1266-201ENST00000408125 84 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 RPLP1P10-201ENST00000413972 339 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 RPSAP60-201ENST00000415403 880 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 AC008173.1-201ENST00000418901 264 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 FABP5P1-201ENST00000423401 411 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC000089.1-201ENST00000424559 801 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC245517.2-201ENST00000442890 346 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 CEACAMP11-201ENST00000455211 583 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 NMNAT1P3-201ENST00000457517 888 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC135721.2-201ENST00000464237 300 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 RN7SL70P-201ENST00000478322 302 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC7.44□□□□□ -1.22
SOX4Q06945 AC093878.1-201ENST00000515630 432 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC7.44□□□□□ -1.22
SOX4Q06945 OR8I1P-201ENST00000529291 931 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 PDCL2P2-201ENST00000533651 189 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 CCNG2P1-201ENST00000549521 1000 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 EEF1B2P4-201ENST00000551398 348 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC7.44□□□□□ -1.22
SOX4Q06945 AC023827.2-201ENST00000566880 1061 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 GARSP1-201ENST00000570895 719 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC090616.2-202ENST00000584248 222 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC7.44□□□□□ -1.22
SOX4Q06945 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC7.44□□□□□ -1.22
SOX4Q06945 AC072039.2-201ENST00000608883 439 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC007204.2-201ENST00000615022 616 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AL158063.1-201ENST00000615349 536 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC024595.1-201ENST00000623088 387 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 AC007494.3-201ENST00000624660 743 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 SAMMSON-214ENST00000641395 1264 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 CASC19-232ENST00000641480 1244 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 ZNF663P-202ENST00000641770 1131 ntBASIC7.44□□□□□ -1.22
SOX4Q06945 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC7.44□□□□□ -1.22
SOX4Q06945 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SOX4Q06945 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC7.44□□□□□ -1.22
SOX4Q06945 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC7.43□□□□□ -1.22
SOX4Q06945 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC7.43□□□□□ -1.22
SOX4Q06945 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC7.43□□□□□ -1.22
SOX4Q06945 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
SOX4Q06945 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC7.43□□□□□ -1.22
SOX4Q06945 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC7.43□□□□□ -1.22
SOX4Q06945 AC019072.1-201ENST00000604535 1551 ntBASIC7.43□□□□□ -1.22
SOX4Q06945 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
SOX4Q06945 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
SOX4Q06945 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
SOX4Q06945 Y_RNA.6-201ENST00000362350 114 ntBASIC7.43□□□□□ -1.22
SOX4Q06945 RNA5SP382-201ENST00000363355 112 ntBASIC7.43□□□□□ -1.22
SOX4Q06945 RNU6-553P-201ENST00000364047 96 ntBASIC7.43□□□□□ -1.22
SOX4Q06945 RNU6-1283P-201ENST00000365314 105 ntBASIC7.43□□□□□ -1.22
SOX4Q06945 RN7SKP47-201ENST00000365347 328 ntBASIC7.43□□□□□ -1.22
SOX4Q06945 RN7SKP62-201ENST00000384539 329 ntBASIC7.43□□□□□ -1.22
SOX4Q06945 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
SOX4Q06945 AL590762.1-201ENST00000391782 432 ntBASIC7.43□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 140.6 ms