Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC9.73□□□□□ -0.85
CUX1P39880 RPL7AP6-201ENST00000477943 801 ntBASIC9.73□□□□□ -0.85
CUX1P39880 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC9.73□□□□□ -0.85
CUX1P39880 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC9.73□□□□□ -0.85
CUX1P39880 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC9.73□□□□□ -0.85
CUX1P39880 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC9.73□□□□□ -0.85
CUX1P39880 AC012616.1-201ENST00000600294 197 ntBASIC9.73□□□□□ -0.85
CUX1P39880 TAS2R6P-201ENST00000605022 826 ntBASIC9.73□□□□□ -0.85
CUX1P39880 MIR6837-201ENST00000620884 64 ntBASIC9.73□□□□□ -0.85
CUX1P39880 AC130448.2-201ENST00000624082 374 ntBASIC9.73□□□□□ -0.85
CUX1P39880 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 AC137056.2-201ENST00000624055 1958 ntBASIC9.73□□□□□ -0.85
CUX1P39880 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
CUX1P39880 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 AC023421.1-201ENST00000590535 1785 ntBASIC9.73□□□□□ -0.85
CUX1P39880 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC9.73□□□□□ -0.85
CUX1P39880 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC9.73□□□□□ -0.85
CUX1P39880 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC9.73□□□□□ -0.85
CUX1P39880 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 AC011504.1-201ENST00000623331 4103 ntBASIC9.72□□□□□ -0.85
CUX1P39880 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
CUX1P39880 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC9.72□□□□□ -0.85
CUX1P39880 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC9.72□□□□□ -0.85
CUX1P39880 CYCSP6-201ENST00000434498 302 ntBASIC9.72□□□□□ -0.85
CUX1P39880 RAB28P2-201ENST00000454299 641 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC9.72□□□□□ -0.85
CUX1P39880 AC087672.1-201ENST00000479876 766 ntBASIC9.72□□□□□ -0.85
CUX1P39880 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 RPS21P4-201ENST00000487122 248 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC9.72□□□□□ -0.85
CUX1P39880 AC105420.1-201ENST00000504389 582 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC108043.1-201ENST00000512696 574 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC110775.1-201ENST00000513721 462 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC021678.3-201ENST00000517893 476 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC9.72□□□□□ -0.85
CUX1P39880 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC9.72□□□□□ -0.85
CUX1P39880 OR11J2P-201ENST00000555298 907 ntBASIC9.72□□□□□ -0.85
CUX1P39880 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC9.72□□□□□ -0.85
CUX1P39880 MIR4260-201ENST00000583107 67 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC9.72□□□□□ -0.85
CUX1P39880 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC9.72□□□□□ -0.85
CUX1P39880 EEF1A1P14-201ENST00000421195 1376 ntBASIC9.72□□□□□ -0.85
CUX1P39880 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
CUX1P39880 AL355377.1-201ENST00000621125 1653 ntBASIC9.72□□□□□ -0.85
CUX1P39880 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
CUX1P39880 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC9.72□□□□□ -0.85
CUX1P39880 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC9.72□□□□□ -0.85
CUX1P39880 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CUX1P39880 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC9.72□□□□□ -0.85
CUX1P39880 GAPDHP42-201ENST00000406848 981 ntBASIC9.72□□□□□ -0.85
CUX1P39880 PRUNEP1-201ENST00000425846 705 ntBASIC9.72□□□□□ -0.85
CUX1P39880 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC9.72□□□□□ -0.85
CUX1P39880 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC9.72□□□□□ -0.85
CUX1P39880 LDHBP2-201ENST00000456969 1005 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC079841.1-201ENST00000481228 950 ntBASIC9.72□□□□□ -0.85
CUX1P39880 RN7SL570P-201ENST00000484405 292 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC9.72□□□□□ -0.85
CUX1P39880 TPM3P3-201ENST00000521343 354 ntBASIC9.72□□□□□ -0.85
CUX1P39880 AL137246.2-201ENST00000613439 662 ntBASIC9.72□□□□□ -0.85
CUX1P39880 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
CUX1P39880 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
CUX1P39880 MAPK10-338ENST00000641647 3362 ntBASIC9.71□□□□□ -0.85
CUX1P39880 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
CUX1P39880 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.85
CUX1P39880 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC9.71□□□□□ -0.85
CUX1P39880 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
CUX1P39880 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC9.71□□□□□ -0.86
CUX1P39880 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
CUX1P39880 AC130304.1-201ENST00000622942 2385 ntBASIC9.71□□□□□ -0.86
CUX1P39880 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
CUX1P39880 RNU1-77P-201ENST00000390868 162 ntBASIC9.71□□□□□ -0.86
CUX1P39880 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX1P39880 AC090638.1-201ENST00000498296 909 ntBASIC9.71□□□□□ -0.86
CUX1P39880 AC024451.1-201ENST00000508013 779 ntBASIC9.71□□□□□ -0.86
CUX1P39880 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC9.71□□□□□ -0.86
CUX1P39880 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC9.71□□□□□ -0.86
CUX1P39880 MRPS21P7-201ENST00000566937 238 ntBASIC9.71□□□□□ -0.86
CUX1P39880 AC004890.3-201ENST00000605566 1095 ntBASIC9.71□□□□□ -0.86
CUX1P39880 AC010245.2-201ENST00000606908 1167 ntBASIC9.71□□□□□ -0.86
CUX1P39880 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
CUX1P39880 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
CUX1P39880 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
CUX1P39880 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 MAPK10-365ENST00000641902 3825 ntBASIC9.7□□□□□ -0.86
CUX1P39880 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
CUX1P39880 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 137.8 ms