Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 RNU105B-201ENST00000364478 208 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 OR2W4P-201ENST00000406496 926 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 RN7SKP166-201ENST00000410812 305 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 GABARAPL3-201ENST00000412799 354 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 LDHC-203ENST00000535809 757 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 AL021918.2-201ENST00000613415 194 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC88AQ3V6T2 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.34□□□□□ -1.24
CCDC88AQ3V6T2 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.34□□□□□ -1.24
CCDC88AQ3V6T2 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
CCDC88AQ3V6T2 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.34□□□□□ -1.24
CCDC88AQ3V6T2 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
CCDC88AQ3V6T2 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.24
CCDC88AQ3V6T2 AL589993.1-201ENST00000407450 2524 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 AL359091.1-201ENST00000449048 1734 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 SDC4P-201ENST00000453285 601 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 AL157777.1-201ENST00000468100 304 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 AC004815.1-201ENST00000484185 331 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 TAS2R6P-201ENST00000605022 826 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 AC087565.3-203ENST00000641018 837 ntBASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC88AQ3V6T2 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 LPP-208ENST00000448637 5835 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 RNA5SP183-201ENST00000362452 119 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 CNOT7P2-201ENST00000441051 832 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 BX284632.1-201ENST00000478218 541 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 FCF1-203ENST00000553615 954 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AP001496.3-201ENST00000580230 913 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 SPATA31C1-201ENST00000420021 3895 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 TMEM75-201ENST00000624314 2165 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC009948.3-201ENST00000603415 1798 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 EIF4A1P7-201ENST00000421800 1220 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 SPRYD7P1-201ENST00000443861 570 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC115223.1-201ENST00000466377 870 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 CDC42P3-201ENST00000518493 633 ntBASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC88AQ3V6T2 AC141002.1-201ENST00000607025 279 ntBASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms