Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 RN7SKP28-201ENST00000364770 305 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 MIR640-201ENST00000385086 96 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 RNA5SP339-201ENST00000390987 122 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 AL589647.1-201ENST00000402485 466 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.97□□□□□ -1.29
COL4A5P29400 SLC35E1P1-201ENST00000419313 864 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.97□□□□□ -1.29
COL4A5P29400 CBX1P2-201ENST00000453841 458 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 LDHBP2-201ENST00000456969 1005 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.97□□□□□ -1.29
COL4A5P29400 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.97□□□□□ -1.29
COL4A5P29400 ELOCP28-201ENST00000590044 317 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 AC000068.2-201ENST00000608816 460 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 AC126915.2-201ENST00000610957 190 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 AL049539.1-201ENST00000611964 459 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.97□□□□□ -1.29
COL4A5P29400 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
COL4A5P29400 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
COL4A5P29400 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
COL4A5P29400 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 AC006213.6-201ENST00000623722 4179 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.97□□□□□ -1.29
COL4A5P29400 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
COL4A5P29400 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 AL591848.4-201ENST00000567832 3472 ntBASIC6.97□□□□□ -1.29
COL4A5P29400 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL4A5P29400 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.29
COL4A5P29400 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.96□□□□□ -1.29
COL4A5P29400 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.96□□□□□ -1.29
COL4A5P29400 AC009784.1-201ENST00000426484 460 ntBASIC6.96□□□□□ -1.29
COL4A5P29400 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC6.96□□□□□ -1.29
COL4A5P29400 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL4A5P29400 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC6.96□□□□□ -1.29
COL4A5P29400 MIR6820-201ENST00000611508 62 ntBASIC6.96□□□□□ -1.29
COL4A5P29400 AL121612.2-201ENST00000612261 482 ntBASIC6.96□□□□□ -1.29
COL4A5P29400 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.96□□□□□ -1.29
COL4A5P29400 AP002505.2-201ENST00000623585 696 ntBASIC6.96□□□□□ -1.29
COL4A5P29400 CTAGE11P-201ENST00000451540 2353 ntBASIC6.96□□□□□ -1.29
COL4A5P29400 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL4A5P29400 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.29
COL4A5P29400 AL133243.4-201ENST00000623116 3109 ntBASIC6.96□□□□□ -1.29
COL4A5P29400 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.29
COL4A5P29400 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL4A5P29400 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
COL4A5P29400 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL4A5P29400 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL4A5P29400 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC6.96□□□□□ -1.3
COL4A5P29400 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
COL4A5P29400 DNAH9-201ENST00000262442 13750 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL4A5P29400 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC6.96□□□□□ -1.3
COL4A5P29400 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
COL4A5P29400 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
COL4A5P29400 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL4A5P29400 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL4A5P29400 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.96□□□□□ -1.3
COL4A5P29400 RN7SKP213-201ENST00000410746 298 ntBASIC6.96□□□□□ -1.3
COL4A5P29400 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.96□□□□□ -1.3
COL4A5P29400 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.96□□□□□ -1.3
COL4A5P29400 CCDC11P1-201ENST00000503137 1162 ntBASIC6.96□□□□□ -1.3
COL4A5P29400 KCTD9P4-201ENST00000526766 1166 ntBASIC6.96□□□□□ -1.3
COL4A5P29400 OR4A42P-201ENST00000531397 938 ntBASIC6.96□□□□□ -1.3
COL4A5P29400 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL4A5P29400 AC244502.2-201ENST00000543361 851 ntBASIC6.96□□□□□ -1.3
COL4A5P29400 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.96□□□□□ -1.3
COL4A5P29400 AC027334.1-201ENST00000603257 310 ntBASIC6.96□□□□□ -1.3
COL4A5P29400 AC073342.3-201ENST00000624211 193 ntBASIC6.96□□□□□ -1.3
COL4A5P29400 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
COL4A5P29400 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.95□□□□□ -1.3
COL4A5P29400 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.95□□□□□ -1.3
COL4A5P29400 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC6.95□□□□□ -1.3
COL4A5P29400 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 PARP4P1-201ENST00000435945 2337 ntBASIC6.95□□□□□ -1.3
COL4A5P29400 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.95□□□□□ -1.3
COL4A5P29400 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL4A5P29400 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL4A5P29400 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.95□□□□□ -1.3
COL4A5P29400 RNU1-24P-201ENST00000364285 165 ntBASIC6.95□□□□□ -1.3
COL4A5P29400 MIR765-201ENST00000390226 114 ntBASIC6.95□□□□□ -1.3
COL4A5P29400 ELOCP3-201ENST00000439303 348 ntBASIC6.95□□□□□ -1.3
COL4A5P29400 AL645937.3-201ENST00000453647 936 ntBASIC6.95□□□□□ -1.3
COL4A5P29400 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.95□□□□□ -1.3
COL4A5P29400 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms