Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC7.26□□□□□ -1.25
COL6A1P12109 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 AC096992.2-201ENST00000609553 1684 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 CDY5P-201ENST00000411487 1580 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 CDY9P-201ENST00000451397 1580 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC7.26□□□□□ -1.25
COL6A1P12109 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 RNY3P9-201ENST00000384727 106 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 MIR130B-202ENST00000385018 82 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AL139039.2-201ENST00000407436 479 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 ZNF885P-201ENST00000420174 1098 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC019205.1-201ENST00000421830 730 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC7.26□□□□□ -1.25
COL6A1P12109 DNAJC19P5-201ENST00000443295 316 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 Z77249.1-201ENST00000444622 1175 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 OR2A1-AS1-202ENST00000467944 422 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 RPS26P39-201ENST00000469206 341 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC7.26□□□□□ -1.25
COL6A1P12109 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 RPL5P14-201ENST00000494197 878 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
COL6A1P12109 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC095052.1-201ENST00000509955 863 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AC112198.4-201ENST00000515450 351 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 IGLVIV-66-1-201ENST00000521832 460 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
COL6A1P12109 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC027544.3-201ENST00000535082 757 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC084759.1-201ENST00000561168 290 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 MIR4433B-201ENST00000581329 102 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC7.26□□□□□ -1.25
COL6A1P12109 AP005136.2-201ENST00000583253 1049 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AC091768.1-201ENST00000609258 930 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC009159.2-201ENST00000617603 606 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 FAM27E2-201ENST00000619668 403 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AP000550.3-201ENST00000637734 379 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC068137.4-201ENST00000638485 296 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
COL6A1P12109 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
COL6A1P12109 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 AC012213.2-201ENST00000562917 4597 ntBASIC7.26□□□□□ -1.25
COL6A1P12109 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC7.26□□□□□ -1.25
COL6A1P12109 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL6A1P12109 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC7.26□□□□□ -1.25
COL6A1P12109 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC7.26□□□□□ -1.25
COL6A1P12109 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 CR1-204ENST00000367052 7469 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 CR1-205ENST00000367053 7469 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 TMSB4XP4-201ENST00000323496 618 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
COL6A1P12109 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 AL096800.1-201ENST00000405326 893 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 RN7SKP278-201ENST00000410504 342 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 CRYGGP-201ENST00000443337 145 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 ELOCP13-201ENST00000443934 329 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 Z83846.1-201ENST00000446798 265 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC104629.2-201ENST00000468627 598 ntBASIC7.25□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms