Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL035090.1-201ENST00000454835 332 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 RN7SL30P-201ENST00000488416 306 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AC096996.1-201ENST00000563813 325 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 SUGT1P3-202ENST00000604259 383 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AL592429.1-201ENST00000403909 1473 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 LINC01616-201ENST00000561816 2280 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 ABHD2-201ENST00000352732 8735 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 AP000866.6-201ENST00000638898 3579 ntBASIC7.59□□□□□ -1.19
SHANK3Q9BYB0 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.59□□□□□ -1.2
SHANK3Q9BYB0 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
SHANK3Q9BYB0 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.59□□□□□ -1.2
SHANK3Q9BYB0 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 MYL6P5-201ENST00000412707 459 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 CYCSP12-201ENST00000437729 300 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AL162739.1-201ENST00000450606 307 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 RPSAP50-201ENST00000481955 852 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 MGST2-204ENST00000506797 634 ntTSL 2 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AC110775.1-201ENST00000513721 462 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 OR4A42P-201ENST00000531397 938 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AL022394.1-201ENST00000606979 292 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AL355974.3-201ENST00000617383 467 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 SORBS1-211ENST00000371247 7354 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 EML5-201ENST00000380664 5910 ntTSL 5 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AC079753.1-201ENST00000623243 3868 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AL391261.1-201ENST00000555712 1479 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 OR13K1P-201ENST00000444577 975 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 RN7SL172P-201ENST00000460535 303 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AC007686.1-201ENST00000488511 463 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AL035690.1-201ENST00000490892 383 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AC007494.1-201ENST00000562293 760 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 AL390318.1-201ENST00000624564 687 ntBASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.58□□□□□ -1.2
SHANK3Q9BYB0 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 MAPK10-365ENST00000641902 3825 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AL139805.2-201ENST00000455305 2433 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AL109941.1-201ENST00000401925 229 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 RPS6P23-201ENST00000413224 722 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AC005033.1-201ENST00000428904 813 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 VN1R54P-201ENST00000435210 1049 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 PSMD10P3-201ENST00000437000 448 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AC006463.2-201ENST00000473326 348 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 STRADBP1-201ENST00000478954 1281 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 RPS4XP1-201ENST00000482189 787 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AP000676.2-201ENST00000529711 301 ntBASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
SHANK3Q9BYB0 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms