Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 RNA5SP105-201ENST00000391123 113 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 RPL24P2-201ENST00000421023 475 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AC022415.1-202ENST00000486612 523 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 NPIPB14P-203ENST00000532298 987 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AC005332.4-201ENST00000592752 579 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 MIR6780B-201ENST00000610307 79 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AL135999.3-201ENST00000610501 812 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 MIR7159-201ENST00000620587 66 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 OR7E91P-202ENST00000642062 1198 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 EEF1A1P14-201ENST00000421195 1376 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 EEF1A1P24-201ENST00000451469 1378 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 BRAFP1-201ENST00000445336 2703 ntBASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 SELE-203ENST00000367775 3389 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 RPL11P4-201ENST00000332269 436 ntBASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 RNA5SP478-201ENST00000364657 115 ntBASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AP002345.2-201ENST00000609961 904 ntBASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 AL596275.2-208ENST00000641192 594 ntBASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4AQ9BY43 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 AL022323.4-201ENST00000623980 13120 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 CNOT6LP1-201ENST00000559681 1462 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 AC094019.1-201ENST00000434678 472 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 HMGB1P7-201ENST00000450921 612 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 OR52E7P-201ENST00000452394 933 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 CCNJP2-201ENST00000457810 1163 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 AC022336.1-201ENST00000475510 337 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 OR4D12P-201ENST00000509361 911 ntBASIC8.15□□□□□ -1.1
CHMP4AQ9BY43 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms