Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.84□□□□□ -1.31
TRIM39Q9HCM9 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
TRIM39Q9HCM9 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.84□□□□□ -1.31
TRIM39Q9HCM9 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.84□□□□□ -1.31
TRIM39Q9HCM9 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.32
TRIM39Q9HCM9 AC090220.1-201ENST00000593078 1699 ntBASIC6.84□□□□□ -1.32
TRIM39Q9HCM9 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC6.84□□□□□ -1.32
TRIM39Q9HCM9 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 MTCO1P15-201ENST00000529569 1526 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AL033543.1-201ENST00000623440 13454 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RNU5B-1-201ENST00000363286 116 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RN7SKP189-201ENST00000365042 330 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AL603865.2-201ENST00000401679 213 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AL136100.1-201ENST00000407696 330 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RNU4-74P-201ENST00000411280 161 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RPS21P8-201ENST00000413365 247 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RPL22P18-201ENST00000417197 377 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RPS4XP6-201ENST00000477670 797 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC082651.2-201ENST00000496833 166 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RNA5SP318-201ENST00000516352 92 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RNA5SP278-201ENST00000517055 102 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC091515.1-201ENST00000548110 679 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 MTND3P13-201ENST00000574391 343 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC231759.1-201ENST00000616455 597 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AC007671.1-201ENST00000616957 830 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 MRPL57P3-201ENST00000619218 176 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 AP002791.1-201ENST00000623291 381 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 FRG1EP-201ENST00000634469 770 ntBASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.83□□□□□ -1.32
TRIM39Q9HCM9 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 AC007114.2-201ENST00000576014 4281 ntBASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 LPAL2-203ENST00000454031 2498 ntBASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 SPATA2P1-201ENST00000431223 2055 ntBASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 RNU4-28P-201ENST00000364739 141 ntBASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 RNA5SP152-201ENST00000365184 110 ntBASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 PPIAP26-201ENST00000377951 522 ntBASIC6.82□□□□□ -1.32
TRIM39Q9HCM9 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms