Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC018717.1-201ENST00000457712 1505 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC005034.3-201ENST00000604845 1747 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 WBP11P1-201ENST00000562560 1931 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 PABPC1P8-201ENST00000452851 2086 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 RNA5SP110-201ENST00000362638 115 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 RNA5SP350-201ENST00000363298 111 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC110749.1-201ENST00000462007 357 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 MTND6P8-201ENST00000503471 522 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 PSMA2P2-201ENST00000504319 686 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 RN7SKP5-201ENST00000517045 272 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 IGKV3D-25-201ENST00000519599 235 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC084337.1-201ENST00000524809 686 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AP000662.1-201ENST00000530952 487 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC073333.2-201ENST00000603589 769 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AP001823.1-201ENST00000604056 1003 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 CYCSP1-201ENST00000604815 315 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AL513218.1-201ENST00000606527 391 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC010998.3-201ENST00000613871 631 ntBASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
HDDC3Q8N4P3 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 UGT2B27P-201ENST00000505092 1620 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC087752.1-201ENST00000391360 558 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC244033.1-201ENST00000426826 870 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AL161636.2-201ENST00000445179 927 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 OR2A3P-201ENST00000493774 953 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC027667.1-201ENST00000545814 304 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC007956.1-201ENST00000555623 542 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 LINC00556-201ENST00000569603 412 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AC022106.1-201ENST00000612834 766 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 AL354854.1-201ENST00000455940 1363 ntBASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDDC3Q8N4P3 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC006213.6-201ENST00000623722 4179 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 RNU6-167P-201ENST00000384292 106 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms