Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC016717.3-201ENST00000624730 554 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC073869.10-201ENST00000642016 354 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AL080317.3-201ENST00000607434 4315 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 CLCA3P-203ENST00000490028 2781 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 ZNF608-201ENST00000306315 5958 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 BAZ2A-211ENST00000549884 6050 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 OR4K12P-201ENST00000406538 961 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 DUTP4-201ENST00000424782 475 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC092647.3-201ENST00000443044 633 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 IGBP1P5-201ENST00000507524 1000 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC063977.5-201ENST00000601044 974 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 MYO15A-217ENST00000615845 11860 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 CASC19-281ENST00000642118 1554 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 TRHDE-201ENST00000261180 10733 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC110373.1-201ENST00000505994 3505 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 SCN5A-208ENST00000450102 6284 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC024651.2-201ENST00000562480 2098 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 USP48-203ENST00000374732 3037 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 OR8J1-201ENST00000303039 1074 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 RNA5SP123-201ENST00000363244 119 ntBASIC5.69□□□□□ -1.5
VPS13AQ96RL7 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 ABHD2-201ENST00000352732 8735 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS13AQ96RL7 SEC22B-201ENST00000578049 6922 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 SNURFL-201ENST00000309296 343 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 RPS6P23-201ENST00000413224 722 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC090638.1-201ENST00000498296 909 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC068790.4-201ENST00000602474 263 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AL109618.2-201ENST00000605527 211 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 MYO5A-205ENST00000399231 12225 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC012313.8-201ENST00000595059 5402 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 MAPK10-261ENST00000641050 3109 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 RPL17P50-201ENST00000396131 546 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 PRPF38AP2-201ENST00000438179 851 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC114728.1-201ENST00000488289 483 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 GARSP1-201ENST00000570895 719 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 MIR5096-201ENST00000583713 70 ntBASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 COL4A6-208ENST00000538570 6528 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 GPR107-202ENST00000372406 7353 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS13AQ96RL7 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms