Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TRBV10-2-201ENST00000426318 395 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 GAPDHP32-201ENST00000433816 998 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LINC00350-201ENST00000438640 422 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC239860.1-201ENST00000444680 1270 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 CREM-224ENST00000468236 582 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 RN7SL12P-201ENST00000473849 290 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 DUXAP2-201ENST00000519198 589 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 RAB30-205ENST00000527633 792 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC087883.1-201ENST00000551882 391 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 COX4I1P1-201ENST00000554239 509 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 GTF2IP22-201ENST00000554443 182 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC133565.1-201ENST00000569218 488 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC138915.2-201ENST00000569776 97 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC040162.2-201ENST00000573092 157 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC010719.1-201ENST00000602992 747 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AP004247.3-201ENST00000608682 624 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC012360.2-201ENST00000609349 391 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LINC00635-221ENST00000609366 784 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC087241.4-201ENST00000612441 480 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 MIR6745-201ENST00000612694 127 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 MIR6762-201ENST00000613340 86 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 U1.31-201ENST00000620022 160 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 ZNF544-216ENST00000600044 2784 ntAPPRIS ALT2 TSL 4 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 PYHIN1-202ENST00000368138 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LCOR-201ENST00000286067 4542 ntBASIC6.01□□□□□ -1.45
CCDC140Q96MF4 MAPK10-233ENST00000515650 2394 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 RFX5-201ENST00000290524 3576 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 DCAF5-208ENST00000556847 2791 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC140Q96MF4 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 SGK1-223ENST00000528577 1850 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AL157895.1-201ENST00000451713 1404 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 USP13-203ENST00000496897 2747 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 MAPK10-272ENST00000641110 2724 ntAPPRIS P2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 MAPK10-290ENST00000641237 2826 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 MEF2A-205ENST00000557942 5413 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 AL512662.1-201ENST00000624850 2251 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6□□□□□ -1.45
CCDC140Q96MF4 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 PRKAR2A-AS1-202ENST00000416209 3447 ntTSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 DAZ2-208ENST00000400493 3516 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC068860.1-201ENST00000623701 3736 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 OR10J3-201ENST00000332217 990 ntAPPRIS P1 BASIC6□□□□□ -1.45
CCDC140Q96MF4 C2orf80-201ENST00000341287 1238 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 Y_RNA.302-201ENST00000364997 102 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CCDC140Q96MF4 SUGT1P2-201ENST00000379452 992 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 RNU6-317P-201ENST00000384031 107 ntBASIC6□□□□□ -1.45
CCDC140Q96MF4 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC140Q96MF4 AL034372.1-201ENST00000407586 754 ntBASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms