Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 RAB28P2-201ENST00000454299 641 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 RPS27AP2-201ENST00000457576 465 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 AC104164.1-201ENST00000460282 590 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.24□□□□□ -1.41
HMGA1P17096 RN7SL57P-201ENST00000493687 290 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 AC011411.1-201ENST00000509592 876 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.24□□□□□ -1.41
HMGA1P17096 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
HMGA1P17096 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.24□□□□□ -1.41
HMGA1P17096 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.24□□□□□ -1.41
HMGA1P17096 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.24□□□□□ -1.41
HMGA1P17096 AC027334.1-201ENST00000603257 310 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 CYCSP1-201ENST00000604815 315 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 FAM72A-208ENST00000607379 1139 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.24□□□□□ -1.41
HMGA1P17096 RNA5SP440-201ENST00000612665 119 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 MIR6886-201ENST00000619864 61 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.24□□□□□ -1.41
HMGA1P17096 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 DOCK11P1-201ENST00000553480 5932 ntBASIC6.24□□□□□ -1.41
HMGA1P17096 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.24□□□□□ -1.41
HMGA1P17096 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HMGA1P17096 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.24□□□□□ -1.41
HMGA1P17096 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
HMGA1P17096 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HMGA1P17096 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HMGA1P17096 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HMGA1P17096 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGA1P17096 PDZK1P1-202ENST00000425209 1350 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HMGA1P17096 AC005034.3-201ENST00000604845 1747 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 RNA5SP178-201ENST00000410380 128 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 RN7SKP166-201ENST00000410812 305 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 RPL36P18-201ENST00000419316 318 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 AC093155.2-201ENST00000420734 937 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.23□□□□□ -1.41
HMGA1P17096 AC064862.4-201ENST00000442180 334 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 RPL36AP39-201ENST00000445859 318 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 CT45A11P-201ENST00000448043 1134 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.23□□□□□ -1.41
HMGA1P17096 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.23□□□□□ -1.41
HMGA1P17096 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 RN7SL352P-201ENST00000466002 277 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 RPL23AP40-201ENST00000487630 390 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.23□□□□□ -1.41
HMGA1P17096 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC6.23□□□□□ -1.41
HMGA1P17096 OR7E158P-201ENST00000524483 910 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.23□□□□□ -1.41
HMGA1P17096 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.23□□□□□ -1.41
HMGA1P17096 AC007494.1-201ENST00000562293 760 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.23□□□□□ -1.41
HMGA1P17096 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 uc_338.26-201ENST00000612659 160 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGA1P17096 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGA1P17096 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 AL353763.1-201ENST00000624467 1628 ntBASIC6.23□□□□□ -1.41
HMGA1P17096 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
HMGA1P17096 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGA1P17096 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
HMGA1P17096 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HMGA1P17096 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGA1P17096 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
HMGA1P17096 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGA1P17096 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HMGA1P17096 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGA1P17096 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGA1P17096 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
HMGA1P17096 PARP4P2-201ENST00000446672 3326 ntBASIC6.22□□□□□ -1.41
HMGA1P17096 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGA1P17096 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGA1P17096 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.22□□□□□ -1.41
HMGA1P17096 USP9YP3-201ENST00000434481 1766 ntBASIC6.22□□□□□ -1.41
HMGA1P17096 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.22□□□□□ -1.41
HMGA1P17096 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.22□□□□□ -1.41
HMGA1P17096 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGA1P17096 MIR375-201ENST00000362103 64 ntBASIC6.22□□□□□ -1.41
HMGA1P17096 SNORA51.1-201ENST00000363243 140 ntBASIC6.22□□□□□ -1.41
HMGA1P17096 LSM5-203ENST00000409782 649 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGA1P17096 RN7SKP151-201ENST00000410230 316 ntBASIC6.22□□□□□ -1.41
HMGA1P17096 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC6.22□□□□□ -1.41
HMGA1P17096 RPS4XP5-201ENST00000419038 768 ntBASIC6.22□□□□□ -1.41
HMGA1P17096 BX119321.1-201ENST00000428912 797 ntBASIC6.22□□□□□ -1.41
HMGA1P17096 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.22□□□□□ -1.41
HMGA1P17096 AC023141.9-201ENST00000458734 412 ntBASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms