RNA–Protein interactions for RNA: ENST00000620864.1

COLCA1-205, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best) BASIC

Gene COLCA1, Length 8,098 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-205ENST00000620864 DCAF8L2P0C7V8 631 aa12.47□□□□□ -0.41
COLCA1-205ENST00000620864 PELP1Q8IZL8 1130 aaKnown RBP11.98□□□□□ -0.49
COLCA1-205ENST00000620864 MYT1Q01538 1121 aa11.71□□□□□ -0.54
COLCA1-205ENST00000620864 AEBP2Q6ZN18 517 aaPredicted RBP11.49□□□□□ -0.57
COLCA1-205ENST00000620864 CCER1Q8TC90 406 aaPredicted RBP11.37□□□□□ -0.59
COLCA1-205ENST00000620864 FAM9AQ8IZU1 332 aaPredicted RBP11.3□□□□□ -0.6
COLCA1-205ENST00000620864 NISCHQ9Y2I1 1504 aa11.28□□□□□ -0.6
COLCA1-205ENST00000620864 ERICH6Q7L0X2 663 aa11.26□□□□□ -0.61
COLCA1-205ENST00000620864 CENPBP07199 599 aaPredicted RBP11.14□□□□□ -0.63
COLCA1-205ENST00000620864 SHROOM4Q9ULL8 1493 aa11.07□□□□□ -0.64
COLCA1-205ENST00000620864 YTHDC1Q96MU7 727 aaKnown RBP11.06□□□□□ -0.64
COLCA1-205ENST00000620864 SUPT5HO00267 1087 aaKnown RBP11.04□□□□□ -0.64
COLCA1-205ENST00000620864 EHMT2Q96KQ7 1210 aa11□□□□□ -0.65
COLCA1-205ENST00000620864 ZEB1P37275 1124 aaPredicted RBP10.99□□□□□ -0.65
COLCA1-205ENST00000620864 TTBK1Q5TCY1 1321 aaPredicted RBP10.94□□□□□ -0.66
COLCA1-205ENST00000620864 APLP2Q06481 763 aa10.91□□□□□ -0.66
COLCA1-205ENST00000620864 NEFLP07196 543 aa10.86□□□□□ -0.67
COLCA1-205ENST00000620864 MYT1LQ9UL68 1186 aa10.83□□□□□ -0.68
COLCA1-205ENST00000620864 TRIM41Q8WV44 630 aa10.68□□□□□ -0.7
COLCA1-205ENST00000620864 DAXXQ9UER7 740 aaPredicted RBP10.68□□□□□ -0.7
COLCA1-205ENST00000620864 RANGAP1P46060 587 aaPredicted RBP10.67□□□□□ -0.7
COLCA1-205ENST00000620864 ATP1B4Q9UN42 357 aaPredicted RBP10.67□□□□□ -0.7
COLCA1-205ENST00000620864 DCAF8L1A6NGE4 600 aa10.64□□□□□ -0.71
COLCA1-205ENST00000620864 TRHP20396 242 aaPredicted RBP10.64□□□□□ -0.71
COLCA1-205ENST00000620864 PLPPR3Q6T4P5 718 aa10.58□□□□□ -0.72
COLCA1-205ENST00000620864 ABCC9O60706 1549 aa10.57□□□□□ -0.72
COLCA1-205ENST00000620864 PCGF6Q9BYE7 350 aa10.54□□□□□ -0.72
COLCA1-205ENST00000620864 CHIC1Q5VXU3 224 aa10.53□□□□□ -0.72
COLCA1-205ENST00000620864 RTL5Q5HYW3 569 aaPredicted RBP10.51□□□□□ -0.73
COLCA1-205ENST00000620864 PABPN1Q86U42 306 aaKnown RBP eCLIP10.51□□□□□ -0.73
COLCA1-205ENST00000620864 PHF23Q9BUL5 403 aaPredicted RBP10.45□□□□□ -0.74
COLCA1-205ENST00000620864 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.41□□□□□ -0.74
COLCA1-205ENST00000620864 HNRNPUL2Q1KMD3 747 aaKnown RBP10.41□□□□□ -0.74
COLCA1-205ENST00000620864 SCAF1Q9H7N4 1312 aaKnown RBP10.4□□□□□ -0.74
COLCA1-205ENST00000620864 FOXD1Q16676 465 aa10.37□□□□□ -0.75
COLCA1-205ENST00000620864 ZNF316A6NFI3 1004 aaPredicted RBP10.37□□□□□ -0.75
COLCA1-205ENST00000620864 GLIPR1L2Q4G1C9 344 aa10.31□□□□□ -0.76
COLCA1-205ENST00000620864 FBLN2P98095 1184 aa10.29□□□□□ -0.76
COLCA1-205ENST00000620864 ESF1Q9H501 851 aaKnown RBP10.26□□□□□ -0.77
COLCA1-205ENST00000620864 UBTFP17480 764 aaKnown RBP10.26□□□□□ -0.77
COLCA1-205ENST00000620864 BCANQ96GW7 911 aa10.23□□□□□ -0.77
COLCA1-205ENST00000620864 SLC4A1APQ9BWU0 796 aaKnown RBP10.22□□□□□ -0.77
COLCA1-205ENST00000620864 TRIM26Q12899 539 aaPredicted RBP10.21□□□□□ -0.77
COLCA1-205ENST00000620864 EIF5BO60841 1220 aaKnown RBP10.2□□□□□ -0.78
COLCA1-205ENST00000620864 SENP3Q9H4L4 574 aaPredicted RBP10.19□□□□□ -0.78
COLCA1-205ENST00000620864 HRCP23327 699 aa10.18□□□□□ -0.78
COLCA1-205ENST00000620864 POLR3GLQ9BT43 218 aa10.18□□□□□ -0.78
COLCA1-205ENST00000620864 CLSPNQ9HAW4 1339 aa10.14□□□□□ -0.79
COLCA1-205ENST00000620864 NPM1P06748 294 aaKnown RBP eCLIP10.08□□□□□ -0.8
COLCA1-205ENST00000620864 CDK11AQ9UQ88 783 aaPredicted RBP10.08□□□□□ -0.8
COLCA1-205ENST00000620864 CNGB1Q14028 1251 aaPredicted RBP10.06□□□□□ -0.8
COLCA1-205ENST00000620864 ANP32BQ92688 251 aaKnown RBP10.06□□□□□ -0.8
COLCA1-205ENST00000620864 A0A0G2JS52 829 aa10.05□□□□□ -0.8
COLCA1-205ENST00000620864 ZBTB47Q9UFB7 747 aaPredicted RBP10□□□□□ -0.81
COLCA1-205ENST00000620864 SLC24A1O60721 1099 aa9.99□□□□□ -0.81
COLCA1-205ENST00000620864 ANP32AP39687 249 aaKnown RBP9.99□□□□□ -0.81
COLCA1-205ENST00000620864 DIEXFQ68CQ4 756 aaKnown RBP9.98□□□□□ -0.81
COLCA1-205ENST00000620864 ITGAEP38570 1179 aa9.98□□□□□ -0.81
COLCA1-205ENST00000620864 ARID4BQ4LE39 1312 aaPredicted RBP9.9□□□□□ -0.82
COLCA1-205ENST00000620864 ARID3CA6NKF2 412 aa9.88□□□□□ -0.83
COLCA1-205ENST00000620864 TNNT2P45379 298 aaPredicted RBP9.87□□□□□ -0.83
COLCA1-205ENST00000620864 NEFMP07197 916 aa9.86□□□□□ -0.83
COLCA1-205ENST00000620864 GTF3C3Q9Y5Q9 886 aa9.86□□□□□ -0.83
COLCA1-205ENST00000620864 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.86□□□□□ -0.83
COLCA1-205ENST00000620864 HAP1P54257 671 aaPredicted RBP9.85□□□□□ -0.83
COLCA1-205ENST00000620864 PPARGC1BQ86YN6 1023 aaKnown RBP9.84□□□□□ -0.83
COLCA1-205ENST00000620864 ANP32CO43423 234 aa9.84□□□□□ -0.83
COLCA1-205ENST00000620864 BCL11AQ9H165 835 aa9.82□□□□□ -0.84
COLCA1-205ENST00000620864 MEX3CQ5U5Q3 659 aaKnown RBP9.81□□□□□ -0.84
COLCA1-205ENST00000620864 CFAP44Q96MT7 982 aa9.81□□□□□ -0.84
COLCA1-205ENST00000620864 UPF2Q9HAU5 1272 aaKnown RBP9.8□□□□□ -0.84
COLCA1-205ENST00000620864 ANP32EQ9BTT0 268 aa9.8□□□□□ -0.84
COLCA1-205ENST00000620864 C14orf37Q86TY3 774 aa9.79□□□□□ -0.84
COLCA1-205ENST00000620864 AMER1Q5JTC6 1135 aaPredicted RBP9.79□□□□□ -0.84
COLCA1-205ENST00000620864 CANXP27824 592 aaKnown RBP9.76□□□□□ -0.85
COLCA1-205ENST00000620864 ACIN1Q9UKV3 1341 aaKnown RBP9.76□□□□□ -0.85
COLCA1-205ENST00000620864 TRIM44Q96DX7 344 aaPredicted RBP9.75□□□□□ -0.85
COLCA1-205ENST00000620864 ERCC6Q03468 1493 aa9.75□□□□□ -0.85
COLCA1-205ENST00000620864 SCRIBQ14160 1630 aa9.74□□□□□ -0.85
COLCA1-205ENST00000620864 STAG3Q9UJ98 1225 aa9.74□□□□□ -0.85
COLCA1-205ENST00000620864 HSP90AA1P07900 732 aaKnown RBP9.73□□□□□ -0.85
COLCA1-205ENST00000620864 P3H3Q8IVL6 736 aa9.73□□□□□ -0.85
COLCA1-205ENST00000620864 FAM50AQ14320 339 aaKnown RBP9.71□□□□□ -0.86
COLCA1-205ENST00000620864 CHMP7Q8WUX9 453 aaPredicted RBP9.71□□□□□ -0.86
COLCA1-205ENST00000620864 NCLP19338 710 aaKnown RBP9.7□□□□□ -0.86
COLCA1-205ENST00000620864 ZNF777Q9ULD5 760 aaPredicted RBP9.7□□□□□ -0.86
COLCA1-205ENST00000620864 KRI1Q8N9T8 703 aaKnown RBP9.69□□□□□ -0.86
COLCA1-205ENST00000620864 TRIM52Q96A61 297 aa9.69□□□□□ -0.86
COLCA1-205ENST00000620864 SF3B2Q13435 895 aaKnown RBP9.67□□□□□ -0.86
COLCA1-205ENST00000620864 ZNF326Q5BKZ1 582 aaKnown RBP9.66□□□□□ -0.86
COLCA1-205ENST00000620864 CDK11BP21127 795 aaKnown RBP9.65□□□□□ -0.86
COLCA1-205ENST00000620864 CHGAP10645 457 aaKnown RBP9.64□□□□□ -0.87
COLCA1-205ENST00000620864 ERICH6BQ5W0A0 696 aa9.64□□□□□ -0.87
COLCA1-205ENST00000620864 RB1CC1Q8TDY2 1594 aa9.63□□□□□ -0.87
COLCA1-205ENST00000620864 DDRGK1Q96HY6 314 aa9.63□□□□□ -0.87
COLCA1-205ENST00000620864 KLHL34Q8N239 644 aa9.62□□□□□ -0.87
COLCA1-205ENST00000620864 NPM2Q86SE8 214 aaKnown RBP9.6□□□□□ -0.87
COLCA1-205ENST00000620864 PLEKHG5O94827 1062 aa9.6□□□□□ -0.87
COLCA1-205ENST00000620864 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.6□□□□□ -0.87
COLCA1-205ENST00000620864 BECN1Q14457 450 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms