Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RN7SL657P-201ENST00000582431 293 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 C17orf80-208ENST00000582793 531 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC119403.2-201ENST00000590960 598 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC068726.1-201ENST00000610993 341 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AL157762.1-201ENST00000619612 415 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 AC069542.2-201ENST00000624816 216 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 SNX18P12-201ENST00000624821 759 ntBASIC6.5□□□□□ -1.37
CCDC42Q96M95 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC42Q96M95 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 ZNF37CP-201ENST00000406795 241 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 RN7SKP144-201ENST00000411108 279 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 RPS15AP30-201ENST00000420976 390 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC094019.1-201ENST00000434678 472 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 RN7SL836P-201ENST00000476140 296 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 RPL34P33-201ENST00000486062 334 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC015524.1-201ENST00000491585 472 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 OR51A1P-201ENST00000511110 946 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC027796.1-201ENST00000575593 512 ntBASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC42Q96M95 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.49□□□□□ -1.37
CCDC42Q96M95 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 SNORD94-201ENST00000386037 137 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 RNU11-201ENST00000387069 134 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 MTND2P12-201ENST00000417560 1252 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 OR3D1P-201ENST00000438288 955 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 RPL5P10-201ENST00000445207 894 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 RPL36AP55-201ENST00000454114 305 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 NATP-201ENST00000523491 878 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 AC007346.2-201ENST00000564816 892 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 AC025283.1-201ENST00000572039 734 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 AL589765.6-201ENST00000601909 549 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 AL360012.1-201ENST00000602813 131 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 AC025470.1-201ENST00000510053 2032 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 AC138907.8-201ENST00000623981 2256 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 AC123769.1-201ENST00000530992 3192 ntBASIC6.48□□□□□ -1.37
CCDC42Q96M95 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC42Q96M95 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC42Q96M95 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC42Q96M95 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms