Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
MSH3P20585 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.18□□□□□ -1.42
MSH3P20585 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 ARL4AP4-201ENST00000434170 518 ntBASIC6.18□□□□□ -1.42
MSH3P20585 PPIAP10-201ENST00000438675 458 ntBASIC6.18□□□□□ -1.42
MSH3P20585 H3F3BP1-201ENST00000440551 403 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AC016908.1-201ENST00000442571 1219 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AC079922.1-201ENST00000443291 359 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH3P20585 EEF1B2P3-201ENST00000447718 678 ntBASIC6.18□□□□□ -1.42
MSH3P20585 HIGD1AP16-201ENST00000450986 258 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AC103563.5-201ENST00000455643 364 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AP002453.1-201ENST00000492327 668 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AL117692.1-201ENST00000494283 713 ntBASIC6.18□□□□□ -1.42
MSH3P20585 SNX18P24-201ENST00000505249 671 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 RN7SKP183-201ENST00000517169 324 ntBASIC6.18□□□□□ -1.42
MSH3P20585 MTND2P7-201ENST00000521337 640 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 NATP-201ENST00000523491 878 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.18□□□□□ -1.42
MSH3P20585 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 SETP3-201ENST00000581726 813 ntBASIC6.18□□□□□ -1.42
MSH3P20585 DYNLL1P1-201ENST00000595442 269 ntBASIC6.18□□□□□ -1.42
MSH3P20585 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 AL161912.3-201ENST00000605404 628 ntBASIC6.18□□□□□ -1.42
MSH3P20585 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH3P20585 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH3P20585 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH3P20585 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH3P20585 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 AL591135.1-201ENST00000401578 5914 ntBASIC6.18□□□□□ -1.42
MSH3P20585 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH3P20585 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 AC130360.2-201ENST00000533477 1556 ntBASIC6.18□□□□□ -1.42
MSH3P20585 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH3P20585 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.18□□□□□ -1.42
MSH3P20585 AC093297.3-201ENST00000607056 2517 ntBASIC6.18□□□□□ -1.42
MSH3P20585 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.18□□□□□ -1.42
MSH3P20585 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
MSH3P20585 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
MSH3P20585 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 RNU1-49P-201ENST00000363468 159 ntBASIC6.17□□□□□ -1.42
MSH3P20585 RNA5SP232-201ENST00000364144 119 ntBASIC6.17□□□□□ -1.42
MSH3P20585 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 RNA5SP198-201ENST00000410376 127 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 AC092865.3-201ENST00000425390 1026 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AC245884.2-201ENST00000426257 404 ntBASIC6.17□□□□□ -1.42
MSH3P20585 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 AC108479.1-201ENST00000431142 427 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 RPL12P30-201ENST00000488389 499 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 SNORA81.2-201ENST00000516868 170 ntBASIC6.17□□□□□ -1.42
MSH3P20585 Y_RNA.710-201ENST00000516975 110 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 AC092865.1-201ENST00000544395 1023 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH3P20585 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 OR4H6P-201ENST00000563771 921 ntBASIC6.17□□□□□ -1.42
MSH3P20585 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 SMIM12P1-201ENST00000603004 274 ntBASIC6.17□□□□□ -1.42
MSH3P20585 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 MIR6721-201ENST00000617181 87 ntBASIC6.17□□□□□ -1.42
MSH3P20585 AC021422.1-201ENST00000621212 473 ntBASIC6.17□□□□□ -1.42
MSH3P20585 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH3P20585 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.17□□□□□ -1.42
MSH3P20585 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms