Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.64■□□□□ 0.73
USH1CQ9Y6N9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 RASA4CP-201ENST00000424092 1398 ntBASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 AC010141.2-201ENST00000452426 721 ntBASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USH1CQ9Y6N9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 PBX2P1-201ENST00000493219 1291 ntBASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 AL354811.1-201ENST00000610286 706 ntBASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
USH1CQ9Y6N9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 AC079598.2-202ENST00000546624 1451 ntBASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.61■□□□□ 0.73
USH1CQ9Y6N9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 EDA-201ENST00000338901 1233 ntBASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
USH1CQ9Y6N9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms