Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 AL137060.1-201ENST00000618151 2648 ntBASIC23.41■■□□□ 1.34
DDX4Q9NQI0 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
DDX4Q9NQI0 LINC01568-207ENST00000641790 1380 ntBASIC23.4■■□□□ 1.34
DDX4Q9NQI0 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC23.4■■□□□ 1.34
DDX4Q9NQI0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DDX4Q9NQI0 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DDX4Q9NQI0 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
DDX4Q9NQI0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 AC005521.1-201ENST00000393351 872 ntBASIC23.39■■□□□ 1.33
DDX4Q9NQI0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 NAPSB-206ENST00000562112 1266 ntBASIC23.39■■□□□ 1.33
DDX4Q9NQI0 AC026271.3-201ENST00000571884 352 ntBASIC23.39■■□□□ 1.33
DDX4Q9NQI0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.33
DDX4Q9NQI0 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 HLA-A-209ENST00000638375 975 ntBASIC23.38■■□□□ 1.33
DDX4Q9NQI0 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
DDX4Q9NQI0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 FSCN1P1-201ENST00000568912 1481 ntBASIC23.37■■□□□ 1.33
DDX4Q9NQI0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 AC005363.2-201ENST00000618631 242 ntBASIC23.37■■□□□ 1.33
DDX4Q9NQI0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 AC073314.1-201ENST00000568729 2216 ntBASIC23.37■■□□□ 1.33
DDX4Q9NQI0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.37■■□□□ 1.33
DDX4Q9NQI0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 AC020907.5-201ENST00000624372 1936 ntBASIC23.36■■□□□ 1.33
DDX4Q9NQI0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
DDX4Q9NQI0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 TMEM179-206ENST00000616017 1645 ntBASIC23.35■■□□□ 1.33
DDX4Q9NQI0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 AC008040.2-201ENST00000461049 708 ntBASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms