Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.59■□□□□ 0.73
TRIM39Q9HCM9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 AC116351.2-201ENST00000606540 1585 ntBASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM39Q9HCM9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 AC133681.1-201ENST00000465482 601 ntBASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.58■□□□□ 0.72
TRIM39Q9HCM9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 LINC01521-201ENST00000504184 1943 ntBASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 AC239809.2-201ENST00000415381 517 ntBASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 AC124016.1-201ENST00000609552 612 ntBASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.57■□□□□ 0.72
TRIM39Q9HCM9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 AC018553.1-201ENST00000616682 1458 ntBASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 FAM197Y4-202ENST00000622692 608 ntBASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM39Q9HCM9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 KRASP1-201ENST00000407852 552 ntBASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 UBE2SP1-201ENST00000450587 669 ntBASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 TFP1-202ENST00000475455 1573 ntBASIC19.55■□□□□ 0.72
TRIM39Q9HCM9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms