Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS35Q96QK1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 TFP1-202ENST00000475455 1573 ntBASIC19.61■□□□□ 0.73
VPS35Q96QK1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 AL391422.3-201ENST00000603791 2761 ntBASIC19.61■□□□□ 0.73
VPS35Q96QK1 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS35Q96QK1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS35Q96QK1 TCF3P1-201ENST00000423021 1937 ntBASIC19.61■□□□□ 0.73
VPS35Q96QK1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.6■□□□□ 0.73
VPS35Q96QK1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS35Q96QK1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.6■□□□□ 0.73
VPS35Q96QK1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VPS35Q96QK1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS35Q96QK1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS35Q96QK1 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.58■□□□□ 0.73
VPS35Q96QK1 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS35Q96QK1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
VPS35Q96QK1 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS35Q96QK1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS35Q96QK1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS35Q96QK1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.58■□□□□ 0.73
VPS35Q96QK1 AC133681.1-201ENST00000465482 601 ntBASIC19.58■□□□□ 0.72
VPS35Q96QK1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS35Q96QK1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS35Q96QK1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS35Q96QK1 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS35Q96QK1 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS35Q96QK1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS35Q96QK1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
VPS35Q96QK1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS35Q96QK1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS35Q96QK1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS35Q96QK1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms