Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 PRSS44-201ENST00000515154 1146 ntBASIC21.46■■□□□ 1.03
LRCH3Q96II8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRCH3Q96II8 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.46■■□□□ 1.03
LRCH3Q96II8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.45■■□□□ 1.03
LRCH3Q96II8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRCH3Q96II8 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRCH3Q96II8 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRCH3Q96II8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 AC023632.3-201ENST00000521633 145 ntBASIC21.45■■□□□ 1.02
LRCH3Q96II8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 NPAP1P7-201ENST00000613027 823 ntBASIC21.45■■□□□ 1.02
LRCH3Q96II8 AL445675.2-201ENST00000620291 557 ntBASIC21.45■■□□□ 1.02
LRCH3Q96II8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 AL031432.5-201ENST00000641059 760 ntBASIC21.45■■□□□ 1.02
LRCH3Q96II8 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.45■■□□□ 1.02
LRCH3Q96II8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRCH3Q96II8 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRCH3Q96II8 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.44■■□□□ 1.02
LRCH3Q96II8 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRCH3Q96II8 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRCH3Q96II8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRCH3Q96II8 AC127496.7-201ENST00000625110 1798 ntBASIC21.44■■□□□ 1.02
LRCH3Q96II8 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRCH3Q96II8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.44■■□□□ 1.02
LRCH3Q96II8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.44■■□□□ 1.02
LRCH3Q96II8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRCH3Q96II8 AC008622.2-201ENST00000617006 1229 ntBASIC21.44■■□□□ 1.02
LRCH3Q96II8 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.44■■□□□ 1.02
LRCH3Q96II8 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
LRCH3Q96II8 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.44■■□□□ 1.02
LRCH3Q96II8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRCH3Q96II8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRCH3Q96II8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
LRCH3Q96II8 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.43■■□□□ 1.02
LRCH3Q96II8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 AC007663.1-201ENST00000438948 1240 ntBASIC21.43■■□□□ 1.02
LRCH3Q96II8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 CCR12P-201ENST00000446203 998 ntBASIC21.43■■□□□ 1.02
LRCH3Q96II8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.43■■□□□ 1.02
LRCH3Q96II8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.43■■□□□ 1.02
LRCH3Q96II8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.43■■□□□ 1.02
LRCH3Q96II8 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRCH3Q96II8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.43■■□□□ 1.02
LRCH3Q96II8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.43■■□□□ 1.02
LRCH3Q96II8 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRCH3Q96II8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRCH3Q96II8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
LRCH3Q96II8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRCH3Q96II8 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRCH3Q96II8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.42■■□□□ 1.02
LRCH3Q96II8 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.42■■□□□ 1.02
LRCH3Q96II8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.42■■□□□ 1.02
LRCH3Q96II8 AC140113.3-201ENST00000605663 199 ntBASIC21.42■■□□□ 1.02
LRCH3Q96II8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRCH3Q96II8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
LRCH3Q96II8 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRCH3Q96II8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 AC010542.4-201ENST00000563151 1910 ntBASIC21.41■■□□□ 1.02
LRCH3Q96II8 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
LRCH3Q96II8 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRCH3Q96II8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms