Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 AC060766.5-201ENST00000590539 871 ntBASIC18.87■□□□□ 0.61
VMP1Q96GC9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 HLA-B-256ENST00000639848 1089 ntBASIC18.87■□□□□ 0.61
VMP1Q96GC9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VMP1Q96GC9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VMP1Q96GC9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VMP1Q96GC9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.86■□□□□ 0.61
VMP1Q96GC9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.85■□□□□ 0.61
VMP1Q96GC9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VMP1Q96GC9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.84■□□□□ 0.61
VMP1Q96GC9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VMP1Q96GC9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.84■□□□□ 0.61
VMP1Q96GC9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.84■□□□□ 0.61
VMP1Q96GC9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.84■□□□□ 0.61
VMP1Q96GC9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.84■□□□□ 0.61
VMP1Q96GC9 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms