Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHROOM3Q8TF72 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 HLA-G-202ENST00000376815 851 ntBASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 HLA-G-203ENST00000376818 1127 ntBASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 AC233263.1-201ENST00000578059 224 ntBASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 Z82202.1-201ENST00000623446 1880 ntBASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHROOM3Q8TF72 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 AC026366.1-201ENST00000488803 879 ntBASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHROOM3Q8TF72 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 KRT17P3-201ENST00000420566 1262 ntBASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 AC120498.8-201ENST00000614275 531 ntBASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 TMEM179-206ENST00000616017 1645 ntBASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SHROOM3Q8TF72 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.14■□□□□ 0.82
SHROOM3Q8TF72 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SHROOM3Q8TF72 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SHROOM3Q8TF72 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SHROOM3Q8TF72 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.14■□□□□ 0.82
SHROOM3Q8TF72 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SHROOM3Q8TF72 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHROOM3Q8TF72 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms