Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 ABHD17AP1-201ENST00000358206 933 ntBASIC20.29■□□□□ 0.84
RTL3Q8N8U3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
RTL3Q8N8U3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTL3Q8N8U3 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RTL3Q8N8U3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RTL3Q8N8U3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.27■□□□□ 0.83
RTL3Q8N8U3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RTL3Q8N8U3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.83
RTL3Q8N8U3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 PRKY-204ENST00000533551 1019 ntBASIC20.26■□□□□ 0.83
RTL3Q8N8U3 RN7SL471P-201ENST00000580476 299 ntBASIC20.26■□□□□ 0.83
RTL3Q8N8U3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTL3Q8N8U3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 KRT18P29-201ENST00000397031 1267 ntBASIC20.25■□□□□ 0.83
RTL3Q8N8U3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.25■□□□□ 0.83
RTL3Q8N8U3 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms