Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TSPY5P-201ENST00000426936 936 ntBASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 AC116562.4-202ENST00000641738 218 ntBASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 KRT18P56-201ENST00000507275 550 ntBASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.28■□□□□ 0.84
SLC44A3Q8N4M1 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 AL024507.2-201ENST00000606070 2574 ntBASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 RCC2P6-201ENST00000526625 1557 ntBASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 AC008040.2-201ENST00000461049 708 ntBASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 YBX1P2-201ENST00000489612 999 ntBASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 KRT126P-201ENST00000549467 1181 ntBASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 AC011298.2-201ENST00000617989 482 ntBASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SLC44A3Q8N4M1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SLC44A3Q8N4M1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 AP000550.4-202ENST00000639755 178 ntBASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
SLC44A3Q8N4M1 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 CCR12P-201ENST00000446203 998 ntBASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 AL121894.2-201ENST00000602977 491 ntBASIC20.25■□□□□ 0.83
SLC44A3Q8N4M1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms