Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
KRT40Q6A162 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
KRT40Q6A162 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.88■■□□□ 1.25
KRT40Q6A162 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
KRT40Q6A162 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
KRT40Q6A162 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
KRT40Q6A162 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
KRT40Q6A162 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC22.88■■□□□ 1.25
KRT40Q6A162 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
KRT40Q6A162 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.88■■□□□ 1.25
KRT40Q6A162 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT40Q6A162 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT40Q6A162 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT40Q6A162 USP36-216ENST00000589424 970 ntTSL 5 BASIC22.88■■□□□ 1.25
KRT40Q6A162 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
KRT40Q6A162 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.88■■□□□ 1.25
KRT40Q6A162 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC22.88■■□□□ 1.25
KRT40Q6A162 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
KRT40Q6A162 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
KRT40Q6A162 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT40Q6A162 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.88■■□□□ 1.25
KRT40Q6A162 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
KRT40Q6A162 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC22.87■■□□□ 1.25
KRT40Q6A162 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.87■■□□□ 1.25
KRT40Q6A162 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC22.87■■□□□ 1.25
KRT40Q6A162 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.87■■□□□ 1.25
KRT40Q6A162 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC22.87■■□□□ 1.25
KRT40Q6A162 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.87■■□□□ 1.25
KRT40Q6A162 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC22.87■■□□□ 1.25
KRT40Q6A162 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT40Q6A162 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC22.87■■□□□ 1.25
KRT40Q6A162 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
KRT40Q6A162 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT40Q6A162 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.86■■□□□ 1.25
KRT40Q6A162 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT40Q6A162 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
KRT40Q6A162 AP001271.2-201ENST00000624018 1556 ntBASIC22.86■■□□□ 1.25
KRT40Q6A162 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
KRT40Q6A162 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.86■■□□□ 1.25
KRT40Q6A162 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.86■■□□□ 1.25
KRT40Q6A162 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.86■■□□□ 1.25
KRT40Q6A162 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT40Q6A162 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT40Q6A162 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT40Q6A162 TREX1-205ENST00000625293 1783 ntBASIC22.86■■□□□ 1.25
KRT40Q6A162 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.85■■□□□ 1.25
KRT40Q6A162 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC22.85■■□□□ 1.25
KRT40Q6A162 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.85■■□□□ 1.25
KRT40Q6A162 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.85■■□□□ 1.25
KRT40Q6A162 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
KRT40Q6A162 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.85■■□□□ 1.25
KRT40Q6A162 AL390719.1-204ENST00000412397 1219 ntBASIC22.85■■□□□ 1.25
KRT40Q6A162 ECEL1P3-201ENST00000427961 737 ntBASIC22.85■■□□□ 1.25
KRT40Q6A162 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 AC008550.1-201ENST00000511500 884 ntBASIC22.85■■□□□ 1.25
KRT40Q6A162 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.85■■□□□ 1.25
KRT40Q6A162 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 AC006557.6-201ENST00000623071 864 ntBASIC22.85■■□□□ 1.25
KRT40Q6A162 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.85■■□□□ 1.25
KRT40Q6A162 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT40Q6A162 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
KRT40Q6A162 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC22.84■■□□□ 1.25
KRT40Q6A162 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.84■■□□□ 1.25
KRT40Q6A162 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.84■■□□□ 1.25
KRT40Q6A162 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC22.84■■□□□ 1.25
KRT40Q6A162 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.84■■□□□ 1.25
KRT40Q6A162 MIR1224-201ENST00000408193 85 ntBASIC22.84■■□□□ 1.25
KRT40Q6A162 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 AC073648.6-201ENST00000641589 218 ntBASIC22.84■■□□□ 1.25
KRT40Q6A162 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC22.84■■□□□ 1.25
KRT40Q6A162 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
KRT40Q6A162 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT40Q6A162 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
KRT40Q6A162 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms