Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.09■□□□□ 0.81
USP39Q53GS9 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.09■□□□□ 0.81
USP39Q53GS9 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.09■□□□□ 0.81
USP39Q53GS9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.09■□□□□ 0.81
USP39Q53GS9 AL031963.3-201ENST00000606441 850 ntBASIC20.09■□□□□ 0.81
USP39Q53GS9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.09■□□□□ 0.81
USP39Q53GS9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.09■□□□□ 0.81
USP39Q53GS9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP39Q53GS9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
USP39Q53GS9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP39Q53GS9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP39Q53GS9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
USP39Q53GS9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP39Q53GS9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.08■□□□□ 0.81
USP39Q53GS9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP39Q53GS9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP39Q53GS9 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP39Q53GS9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.08■□□□□ 0.81
USP39Q53GS9 AC073130.3-201ENST00000624389 2278 ntBASIC20.08■□□□□ 0.81
USP39Q53GS9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USP39Q53GS9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
USP39Q53GS9 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.08■□□□□ 0.81
USP39Q53GS9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.08■□□□□ 0.81
USP39Q53GS9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.08■□□□□ 0.81
USP39Q53GS9 REXO1L10P-201ENST00000615707 1290 ntBASIC20.08■□□□□ 0.81
USP39Q53GS9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.08■□□□□ 0.81
USP39Q53GS9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.08■□□□□ 0.8
USP39Q53GS9 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP39Q53GS9 KRT8P36-201ENST00000489121 1440 ntBASIC20.08■□□□□ 0.8
USP39Q53GS9 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP39Q53GS9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.08■□□□□ 0.8
USP39Q53GS9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
USP39Q53GS9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP39Q53GS9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP39Q53GS9 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
USP39Q53GS9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP39Q53GS9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP39Q53GS9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.07■□□□□ 0.8
USP39Q53GS9 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP39Q53GS9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
USP39Q53GS9 AC079598.2-202ENST00000546624 1451 ntBASIC20.07■□□□□ 0.8
USP39Q53GS9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.07■□□□□ 0.8
USP39Q53GS9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.07■□□□□ 0.8
USP39Q53GS9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
USP39Q53GS9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.07■□□□□ 0.8
USP39Q53GS9 MIR1238-201ENST00000408483 83 ntBASIC20.07■□□□□ 0.8
USP39Q53GS9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.07■□□□□ 0.8
USP39Q53GS9 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.07■□□□□ 0.8
USP39Q53GS9 AP000525.1-201ENST00000608286 694 ntBASIC20.07■□□□□ 0.8
USP39Q53GS9 AC027702.1-201ENST00000563810 1770 ntBASIC20.07■□□□□ 0.8
USP39Q53GS9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP39Q53GS9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP39Q53GS9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
USP39Q53GS9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.07■□□□□ 0.8
USP39Q53GS9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.07■□□□□ 0.8
USP39Q53GS9 LINC01568-207ENST00000641790 1380 ntBASIC20.07■□□□□ 0.8
USP39Q53GS9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP39Q53GS9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.06■□□□□ 0.8
USP39Q53GS9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
USP39Q53GS9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 HLA-G-202ENST00000376815 851 ntBASIC20.06■□□□□ 0.8
USP39Q53GS9 HLA-G-203ENST00000376818 1127 ntBASIC20.06■□□□□ 0.8
USP39Q53GS9 AC005521.1-201ENST00000393351 872 ntBASIC20.06■□□□□ 0.8
USP39Q53GS9 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
USP39Q53GS9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
USP39Q53GS9 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.06■□□□□ 0.8
USP39Q53GS9 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.06■□□□□ 0.8
USP39Q53GS9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP39Q53GS9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
USP39Q53GS9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP39Q53GS9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP39Q53GS9 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP39Q53GS9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
USP39Q53GS9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.05■□□□□ 0.8
USP39Q53GS9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.05■□□□□ 0.8
USP39Q53GS9 NAPSB-206ENST00000562112 1266 ntBASIC20.05■□□□□ 0.8
USP39Q53GS9 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
USP39Q53GS9 MIR2861-201ENST00000636310 90 ntBASIC20.05■□□□□ 0.8
USP39Q53GS9 LINC01521-201ENST00000504184 1943 ntBASIC20.05■□□□□ 0.8
USP39Q53GS9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.05■□□□□ 0.8
USP39Q53GS9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP39Q53GS9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP39Q53GS9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms