Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
USP41Q3LFD5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
USP41Q3LFD5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
USP41Q3LFD5 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 MIR6786-201ENST00000616843 113 ntBASIC21.04■□□□□ 0.96
USP41Q3LFD5 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.04■□□□□ 0.96
USP41Q3LFD5 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.04■□□□□ 0.96
USP41Q3LFD5 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP41Q3LFD5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.04■□□□□ 0.96
USP41Q3LFD5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.04■□□□□ 0.96
USP41Q3LFD5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP41Q3LFD5 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.03■□□□□ 0.96
USP41Q3LFD5 KRT8P9-201ENST00000558927 1449 ntBASIC21.03■□□□□ 0.96
USP41Q3LFD5 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.02■□□□□ 0.96
USP41Q3LFD5 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.02■□□□□ 0.96
USP41Q3LFD5 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
USP41Q3LFD5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.02■□□□□ 0.96
USP41Q3LFD5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.02■□□□□ 0.96
USP41Q3LFD5 KRT18P16-201ENST00000510337 1294 ntBASIC21.02■□□□□ 0.96
USP41Q3LFD5 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.02■□□□□ 0.96
USP41Q3LFD5 FITM1-202ENST00000559294 800 ntBASIC21.02■□□□□ 0.96
USP41Q3LFD5 AL445675.2-201ENST00000620291 557 ntBASIC21.02■□□□□ 0.96
USP41Q3LFD5 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
USP41Q3LFD5 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP41Q3LFD5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
USP41Q3LFD5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.02■□□□□ 0.95
USP41Q3LFD5 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 PHGDH-210ENST00000641115 1638 ntBASIC21.01■□□□□ 0.95
USP41Q3LFD5 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.01■□□□□ 0.95
USP41Q3LFD5 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 TUBB8P6-201ENST00000436895 1288 ntBASIC21.01■□□□□ 0.95
USP41Q3LFD5 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.01■□□□□ 0.95
USP41Q3LFD5 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.01■□□□□ 0.95
USP41Q3LFD5 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
USP41Q3LFD5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP41Q3LFD5 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP41Q3LFD5 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USP41Q3LFD5 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USP41Q3LFD5 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
USP41Q3LFD5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21■□□□□ 0.95
USP41Q3LFD5 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
USP41Q3LFD5 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP41Q3LFD5 TMPOP1-202ENST00000424642 1267 ntBASIC21■□□□□ 0.95
USP41Q3LFD5 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21■□□□□ 0.95
USP41Q3LFD5 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP41Q3LFD5 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
USP41Q3LFD5 AC026271.3-201ENST00000571884 352 ntBASIC21■□□□□ 0.95
USP41Q3LFD5 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21■□□□□ 0.95
USP41Q3LFD5 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP41Q3LFD5 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21■□□□□ 0.95
USP41Q3LFD5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
USP41Q3LFD5 FSCN1P1-201ENST00000568912 1481 ntBASIC21■□□□□ 0.95
USP41Q3LFD5 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21■□□□□ 0.95
USP41Q3LFD5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms