Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL28A1Q2UY09 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 AC027702.1-201ENST00000563810 1770 ntBASIC18.97■□□□□ 0.63
COL28A1Q2UY09 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 AC022616.7-201ENST00000525383 220 ntBASIC18.97■□□□□ 0.63
COL28A1Q2UY09 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 LINC01238-205ENST00000567549 1107 ntBASIC18.97■□□□□ 0.63
COL28A1Q2UY09 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.97■□□□□ 0.63
COL28A1Q2UY09 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 AK4P3-201ENST00000418260 669 ntBASIC18.96■□□□□ 0.63
COL28A1Q2UY09 AC009947.2-201ENST00000444014 672 ntBASIC18.96■□□□□ 0.63
COL28A1Q2UY09 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.96■□□□□ 0.63
COL28A1Q2UY09 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL28A1Q2UY09 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.96■□□□□ 0.62
COL28A1Q2UY09 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL28A1Q2UY09 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL28A1Q2UY09 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms