Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PRKDCP78527 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
PRKDCP78527 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PRKDCP78527 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PRKDCP78527 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
PRKDCP78527 AC080038.3-201ENST00000623346 1952 ntBASIC14.39□□□□□ -0.11
PRKDCP78527 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PRKDCP78527 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC14.39□□□□□ -0.11
PRKDCP78527 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PRKDCP78527 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PRKDCP78527 BX640515.1-201ENST00000617215 977 ntBASIC14.39□□□□□ -0.11
PRKDCP78527 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.39□□□□□ -0.11
PRKDCP78527 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
PRKDCP78527 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.38□□□□□ -0.11
PRKDCP78527 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC14.38□□□□□ -0.11
PRKDCP78527 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.38□□□□□ -0.11
PRKDCP78527 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 MIR1233-2-201ENST00000408138 82 ntBASIC14.38□□□□□ -0.11
PRKDCP78527 MIR1233-1-201ENST00000408722 82 ntBASIC14.38□□□□□ -0.11
PRKDCP78527 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC14.38□□□□□ -0.11
PRKDCP78527 AC004951.3-201ENST00000418645 1148 ntBASIC14.38□□□□□ -0.11
PRKDCP78527 AC092865.5-201ENST00000545435 363 ntBASIC14.38□□□□□ -0.11
PRKDCP78527 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.38□□□□□ -0.11
PRKDCP78527 ZNF444P1-201ENST00000559497 298 ntBASIC14.38□□□□□ -0.11
PRKDCP78527 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 AF228730.7-201ENST00000641842 219 ntBASIC14.38□□□□□ -0.11
PRKDCP78527 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC14.38□□□□□ -0.11
PRKDCP78527 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.38□□□□□ -0.11
PRKDCP78527 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PRKDCP78527 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC14.38□□□□□ -0.11
PRKDCP78527 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PRKDCP78527 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PRKDCP78527 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PRKDCP78527 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC14.37□□□□□ -0.11
PRKDCP78527 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC14.37□□□□□ -0.11
PRKDCP78527 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
PRKDCP78527 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.37□□□□□ -0.11
PRKDCP78527 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC14.37□□□□□ -0.11
PRKDCP78527 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14.37□□□□□ -0.11
PRKDCP78527 AC112907.2-201ENST00000448639 330 ntBASIC14.37□□□□□ -0.11
PRKDCP78527 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.37□□□□□ -0.11
PRKDCP78527 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
PRKDCP78527 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.37□□□□□ -0.11
PRKDCP78527 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.37□□□□□ -0.11
PRKDCP78527 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.37□□□□□ -0.11
PRKDCP78527 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 KRT18P31-201ENST00000506277 1292 ntBASIC14.37□□□□□ -0.11
PRKDCP78527 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
PRKDCP78527 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
PRKDCP78527 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
PRKDCP78527 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
PRKDCP78527 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PRKDCP78527 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
PRKDCP78527 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PRKDCP78527 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.36□□□□□ -0.11
PRKDCP78527 NEK4P2-201ENST00000580004 1012 ntBASIC14.36□□□□□ -0.11
PRKDCP78527 AC140113.3-201ENST00000605663 199 ntBASIC14.36□□□□□ -0.11
PRKDCP78527 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.36□□□□□ -0.11
PRKDCP78527 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 FAM99A-202ENST00000538190 1989 ntBASIC14.36□□□□□ -0.11
PRKDCP78527 LINC01311-201ENST00000565162 1445 ntBASIC14.36□□□□□ -0.11
PRKDCP78527 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.36□□□□□ -0.11
PRKDCP78527 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.36□□□□□ -0.11
PRKDCP78527 AC092329.2-201ENST00000598402 547 ntBASIC14.36□□□□□ -0.11
PRKDCP78527 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
PRKDCP78527 AC092597.1-201ENST00000487352 616 ntBASIC14.36□□□□□ -0.11
PRKDCP78527 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.36□□□□□ -0.11
PRKDCP78527 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 AC027796.2-201ENST00000575326 344 ntBASIC14.36□□□□□ -0.11
PRKDCP78527 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC14.36□□□□□ -0.11
PRKDCP78527 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PRKDCP78527 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PRKDCP78527 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms