Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.01■□□□□ 0.31
ABCA4P78363 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.01■□□□□ 0.31
ABCA4P78363 AK4P3-201ENST00000418260 669 ntBASIC17.01■□□□□ 0.31
ABCA4P78363 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.01■□□□□ 0.31
ABCA4P78363 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
ABCA4P78363 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA4P78363 AC018553.1-201ENST00000616682 1458 ntBASIC17■□□□□ 0.31
ABCA4P78363 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17■□□□□ 0.31
ABCA4P78363 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17■□□□□ 0.31
ABCA4P78363 C1QL1P1-201ENST00000568105 661 ntBASIC17■□□□□ 0.31
ABCA4P78363 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17■□□□□ 0.31
ABCA4P78363 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17■□□□□ 0.31
ABCA4P78363 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 KRT8P20-201ENST00000423953 1409 ntBASIC17■□□□□ 0.31
ABCA4P78363 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 AL137013.1-201ENST00000432946 1228 ntBASIC17■□□□□ 0.31
ABCA4P78363 PPP1R14BP5-201ENST00000440334 435 ntBASIC17■□□□□ 0.31
ABCA4P78363 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17■□□□□ 0.31
ABCA4P78363 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
ABCA4P78363 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17■□□□□ 0.31
ABCA4P78363 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17■□□□□ 0.31
ABCA4P78363 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17■□□□□ 0.31
ABCA4P78363 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA4P78363 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
ABCA4P78363 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.99■□□□□ 0.31
ABCA4P78363 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 KRT8P17-201ENST00000453110 1448 ntBASIC16.99■□□□□ 0.31
ABCA4P78363 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.99■□□□□ 0.31
ABCA4P78363 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.99■□□□□ 0.31
ABCA4P78363 MESTP1-201ENST00000404287 994 ntBASIC16.99■□□□□ 0.31
ABCA4P78363 AC097488.1-201ENST00000507834 756 ntBASIC16.99■□□□□ 0.31
ABCA4P78363 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.99■□□□□ 0.31
ABCA4P78363 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.99■□□□□ 0.31
ABCA4P78363 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.99■□□□□ 0.31
ABCA4P78363 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ABCA4P78363 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.99■□□□□ 0.31
ABCA4P78363 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.99■□□□□ 0.31
ABCA4P78363 AC121338.2-201ENST00000622535 1744 ntBASIC16.99■□□□□ 0.31
ABCA4P78363 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ABCA4P78363 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.99■□□□□ 0.31
ABCA4P78363 AL121894.2-201ENST00000602977 491 ntBASIC16.99■□□□□ 0.31
ABCA4P78363 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.99■□□□□ 0.31
ABCA4P78363 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA4P78363 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
ABCA4P78363 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.98■□□□□ 0.31
ABCA4P78363 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
ABCA4P78363 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 AC006128.1-201ENST00000624704 1661 ntBASIC16.98■□□□□ 0.31
ABCA4P78363 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 AP006587.1-201ENST00000534129 1502 ntBASIC16.98■□□□□ 0.31
ABCA4P78363 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA4P78363 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA4P78363 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.98■□□□□ 0.31
ABCA4P78363 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms