Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
NEK3P51956 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.35■□□□□ 0.85
NEK3P51956 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.35■□□□□ 0.85
NEK3P51956 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.35■□□□□ 0.85
NEK3P51956 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NEK3P51956 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NEK3P51956 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
NEK3P51956 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.34■□□□□ 0.85
NEK3P51956 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
NEK3P51956 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
NEK3P51956 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.34■□□□□ 0.85
NEK3P51956 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.34■□□□□ 0.85
NEK3P51956 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.34■□□□□ 0.85
NEK3P51956 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.34■□□□□ 0.85
NEK3P51956 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.34■□□□□ 0.85
NEK3P51956 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 AC116562.4-201ENST00000641316 2276 ntBASIC20.34■□□□□ 0.85
NEK3P51956 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.34■□□□□ 0.85
NEK3P51956 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
NEK3P51956 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
NEK3P51956 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NEK3P51956 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
NEK3P51956 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.33■□□□□ 0.85
NEK3P51956 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
NEK3P51956 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.33■□□□□ 0.85
NEK3P51956 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NEK3P51956 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.33■□□□□ 0.85
NEK3P51956 KRT17P3-201ENST00000420566 1262 ntBASIC20.33■□□□□ 0.85
NEK3P51956 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
NEK3P51956 AC098590.1-201ENST00000468126 897 ntBASIC20.33■□□□□ 0.85
NEK3P51956 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NEK3P51956 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
NEK3P51956 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
NEK3P51956 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NEK3P51956 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
NEK3P51956 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NEK3P51956 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NEK3P51956 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
NEK3P51956 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.32■□□□□ 0.84
NEK3P51956 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.32■□□□□ 0.84
NEK3P51956 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
NEK3P51956 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.32■□□□□ 0.84
NEK3P51956 AC005829.2-201ENST00000571422 1056 ntBASIC20.32■□□□□ 0.84
NEK3P51956 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
NEK3P51956 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NEK3P51956 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.32■□□□□ 0.84
NEK3P51956 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
NEK3P51956 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
NEK3P51956 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.32■□□□□ 0.84
NEK3P51956 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.31■□□□□ 0.84
NEK3P51956 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.31■□□□□ 0.84
NEK3P51956 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.31■□□□□ 0.84
NEK3P51956 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
NEK3P51956 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NEK3P51956 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NEK3P51956 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 AL390719.1-204ENST00000412397 1219 ntBASIC20.31■□□□□ 0.84
NEK3P51956 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.31■□□□□ 0.84
NEK3P51956 AC066615.1-201ENST00000640911 628 ntBASIC20.31■□□□□ 0.84
NEK3P51956 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.31■□□□□ 0.84
NEK3P51956 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.31■□□□□ 0.84
NEK3P51956 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms