Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 HLA-G-203ENST00000376818 1127 ntBASIC19.31■□□□□ 0.68
CDH3P22223 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH3P22223 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CDH3P22223 C1QBPP2-201ENST00000528754 825 ntBASIC19.31■□□□□ 0.68
CDH3P22223 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.31■□□□□ 0.68
CDH3P22223 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.31■□□□□ 0.68
CDH3P22223 AC233263.1-201ENST00000578059 224 ntBASIC19.31■□□□□ 0.68
CDH3P22223 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.31■□□□□ 0.68
CDH3P22223 AC066615.1-201ENST00000640911 628 ntBASIC19.31■□□□□ 0.68
CDH3P22223 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH3P22223 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.31■□□□□ 0.68
CDH3P22223 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH3P22223 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.31■□□□□ 0.68
CDH3P22223 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH3P22223 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH3P22223 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH3P22223 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH3P22223 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
CDH3P22223 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CDH3P22223 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CDH3P22223 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 AC092720.2-201ENST00000602388 1665 ntBASIC19.3■□□□□ 0.68
CDH3P22223 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH3P22223 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH3P22223 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH3P22223 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH3P22223 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.3■□□□□ 0.68
CDH3P22223 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH3P22223 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.3■□□□□ 0.68
CDH3P22223 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CDH3P22223 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 FAM197Y4-202ENST00000622692 608 ntBASIC19.3■□□□□ 0.68
CDH3P22223 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH3P22223 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.3■□□□□ 0.68
CDH3P22223 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CDH3P22223 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CDH3P22223 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.3■□□□□ 0.68
CDH3P22223 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CDH3P22223 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH3P22223 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.29■□□□□ 0.68
CDH3P22223 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.29■□□□□ 0.68
CDH3P22223 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH3P22223 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH3P22223 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.29■□□□□ 0.68
CDH3P22223 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH3P22223 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 RN7SL471P-201ENST00000580476 299 ntBASIC19.29■□□□□ 0.68
CDH3P22223 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CDH3P22223 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
CDH3P22223 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH3P22223 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 DPP3P2-201ENST00000416030 1696 ntBASIC19.29■□□□□ 0.68
CDH3P22223 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH3P22223 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.29■□□□□ 0.68
CDH3P22223 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CDH3P22223 AC026471.1-201ENST00000564629 3026 ntBASIC19.29■□□□□ 0.68
CDH3P22223 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDH3P22223 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.29■□□□□ 0.68
CDH3P22223 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.28■□□□□ 0.68
CDH3P22223 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.28■□□□□ 0.68
CDH3P22223 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
CDH3P22223 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CDH3P22223 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDH3P22223 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms