Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.66■□□□□ 0.74
MSH3P20585 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.66■□□□□ 0.74
MSH3P20585 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
MSH3P20585 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
MSH3P20585 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.65■□□□□ 0.74
MSH3P20585 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MSH3P20585 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MSH3P20585 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.65■□□□□ 0.74
MSH3P20585 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.65■□□□□ 0.74
MSH3P20585 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.65■□□□□ 0.74
MSH3P20585 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.65■□□□□ 0.74
MSH3P20585 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.65■□□□□ 0.74
MSH3P20585 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
MSH3P20585 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.65■□□□□ 0.74
MSH3P20585 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.65■□□□□ 0.74
MSH3P20585 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.65■□□□□ 0.74
MSH3P20585 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.65■□□□□ 0.74
MSH3P20585 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSH3P20585 AC124283.5-201ENST00000624661 1809 ntBASIC19.65■□□□□ 0.74
MSH3P20585 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSH3P20585 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
MSH3P20585 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.64■□□□□ 0.74
MSH3P20585 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MSH3P20585 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.64■□□□□ 0.73
MSH3P20585 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
MSH3P20585 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.64■□□□□ 0.73
MSH3P20585 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
MSH3P20585 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.64■□□□□ 0.73
MSH3P20585 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
MSH3P20585 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.64■□□□□ 0.73
MSH3P20585 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.64■□□□□ 0.73
MSH3P20585 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.64■□□□□ 0.73
MSH3P20585 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
MSH3P20585 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH3P20585 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.64■□□□□ 0.73
MSH3P20585 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.63■□□□□ 0.73
MSH3P20585 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
MSH3P20585 PHGDH-210ENST00000641115 1638 ntBASIC19.63■□□□□ 0.73
MSH3P20585 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.63■□□□□ 0.73
MSH3P20585 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.63■□□□□ 0.73
MSH3P20585 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
MSH3P20585 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MSH3P20585 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 AC006058.3-201ENST00000606217 1069 ntBASIC19.63■□□□□ 0.73
MSH3P20585 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.63■□□□□ 0.73
MSH3P20585 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
MSH3P20585 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.63■□□□□ 0.73
MSH3P20585 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH3P20585 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
MSH3P20585 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH3P20585 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.62■□□□□ 0.73
MSH3P20585 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.62■□□□□ 0.73
MSH3P20585 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms