Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.79■□□□□ 0.76
SHOX2O60902 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.79■□□□□ 0.76
SHOX2O60902 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.79■□□□□ 0.76
SHOX2O60902 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.79■□□□□ 0.76
SHOX2O60902 MIR3621-201ENST00000580529 85 ntBASIC19.79■□□□□ 0.76
SHOX2O60902 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.79■□□□□ 0.76
SHOX2O60902 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.79■□□□□ 0.76
SHOX2O60902 AC116050.2-201ENST00000612102 1779 ntBASIC19.79■□□□□ 0.76
SHOX2O60902 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SHOX2O60902 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
SHOX2O60902 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.79■□□□□ 0.76
SHOX2O60902 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SHOX2O60902 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SHOX2O60902 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SHOX2O60902 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHOX2O60902 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.79■□□□□ 0.76
SHOX2O60902 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.78■□□□□ 0.76
SHOX2O60902 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.78■□□□□ 0.76
SHOX2O60902 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 FP475955.4-201ENST00000623131 1990 ntBASIC19.78■□□□□ 0.76
SHOX2O60902 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 GUSBP5-201ENST00000418136 578 ntBASIC19.78■□□□□ 0.76
SHOX2O60902 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.78■□□□□ 0.76
SHOX2O60902 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SHOX2O60902 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.78■□□□□ 0.76
SHOX2O60902 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SHOX2O60902 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHOX2O60902 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.78■□□□□ 0.76
SHOX2O60902 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
SHOX2O60902 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SHOX2O60902 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.77■□□□□ 0.76
SHOX2O60902 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 SLC47A1P1-202ENST00000449666 945 ntBASIC19.77■□□□□ 0.76
SHOX2O60902 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.77■□□□□ 0.76
SHOX2O60902 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.77■□□□□ 0.76
SHOX2O60902 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.77■□□□□ 0.76
SHOX2O60902 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.77■□□□□ 0.76
SHOX2O60902 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.77■□□□□ 0.76
SHOX2O60902 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHOX2O60902 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
SHOX2O60902 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHOX2O60902 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHOX2O60902 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.75
SHOX2O60902 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SHOX2O60902 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
SHOX2O60902 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 AC005224.4-201ENST00000583262 1652 ntBASIC19.76■□□□□ 0.75
SHOX2O60902 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SHOX2O60902 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.76■□□□□ 0.75
SHOX2O60902 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.76■□□□□ 0.75
SHOX2O60902 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.76■□□□□ 0.75
SHOX2O60902 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHOX2O60902 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
SHOX2O60902 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SHOX2O60902 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 AC009053.2-201ENST00000563701 2365 ntBASIC19.75■□□□□ 0.75
SHOX2O60902 SRD5A1P1-201ENST00000442297 786 ntBASIC19.75■□□□□ 0.75
SHOX2O60902 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHOX2O60902 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms