Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.19■□□□□ 0.66
UBFD1O14562 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
UBFD1O14562 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UBFD1O14562 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
UBFD1O14562 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.18■□□□□ 0.66
UBFD1O14562 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.18■□□□□ 0.66
UBFD1O14562 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.18■□□□□ 0.66
UBFD1O14562 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.18■□□□□ 0.66
UBFD1O14562 MIR5787-201ENST00000611784 55 ntBASIC19.18■□□□□ 0.66
UBFD1O14562 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.18■□□□□ 0.66
UBFD1O14562 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.18■□□□□ 0.66
UBFD1O14562 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UBFD1O14562 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.17■□□□□ 0.66
UBFD1O14562 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.17■□□□□ 0.66
UBFD1O14562 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
UBFD1O14562 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
UBFD1O14562 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.17■□□□□ 0.66
UBFD1O14562 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
UBFD1O14562 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.17■□□□□ 0.66
UBFD1O14562 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
UBFD1O14562 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
UBFD1O14562 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
UBFD1O14562 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
UBFD1O14562 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
UBFD1O14562 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.16■□□□□ 0.66
UBFD1O14562 AC004911.1-201ENST00000416316 871 ntBASIC19.16■□□□□ 0.66
UBFD1O14562 AL512625.2-201ENST00000417533 625 ntBASIC19.16■□□□□ 0.66
UBFD1O14562 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.16■□□□□ 0.66
UBFD1O14562 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.16■□□□□ 0.66
UBFD1O14562 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.16■□□□□ 0.66
UBFD1O14562 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.16■□□□□ 0.66
UBFD1O14562 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.16■□□□□ 0.66
UBFD1O14562 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
UBFD1O14562 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
UBFD1O14562 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
UBFD1O14562 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
UBFD1O14562 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.16■□□□□ 0.66
UBFD1O14562 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
UBFD1O14562 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
UBFD1O14562 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
UBFD1O14562 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
UBFD1O14562 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
UBFD1O14562 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.15■□□□□ 0.66
UBFD1O14562 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
UBFD1O14562 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.15■□□□□ 0.66
UBFD1O14562 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
UBFD1O14562 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
UBFD1O14562 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
UBFD1O14562 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
UBFD1O14562 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
UBFD1O14562 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
UBFD1O14562 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
UBFD1O14562 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
UBFD1O14562 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.14■□□□□ 0.65
UBFD1O14562 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.14■□□□□ 0.65
UBFD1O14562 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
UBFD1O14562 AC005181.1-201ENST00000604782 1256 ntBASIC19.14■□□□□ 0.65
UBFD1O14562 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
UBFD1O14562 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms