Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
FOXN3O00409 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXN3O00409 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXN3O00409 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXN3O00409 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXN3O00409 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXN3O00409 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
FOXN3O00409 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
FOXN3O00409 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.17■□□□□ 0.98
FOXN3O00409 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
FOXN3O00409 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.17■□□□□ 0.98
FOXN3O00409 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
FOXN3O00409 AC083880.1-201ENST00000608266 535 ntBASIC21.17■□□□□ 0.98
FOXN3O00409 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.17■□□□□ 0.98
FOXN3O00409 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.17■□□□□ 0.98
FOXN3O00409 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXN3O00409 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
FOXN3O00409 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXN3O00409 AC093484.2-201ENST00000580996 2166 ntBASIC21.16■□□□□ 0.98
FOXN3O00409 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
FOXN3O00409 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXN3O00409 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXN3O00409 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.16■□□□□ 0.98
FOXN3O00409 AC116351.2-201ENST00000606540 1585 ntBASIC21.16■□□□□ 0.98
FOXN3O00409 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
FOXN3O00409 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXN3O00409 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.16■□□□□ 0.98
FOXN3O00409 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.16■□□□□ 0.98
FOXN3O00409 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXN3O00409 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
FOXN3O00409 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
FOXN3O00409 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXN3O00409 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
FOXN3O00409 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXN3O00409 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXN3O00409 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXN3O00409 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
FOXN3O00409 AC142086.2-201ENST00000569753 217 ntBASIC21.15■□□□□ 0.98
FOXN3O00409 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXN3O00409 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXN3O00409 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.14■□□□□ 0.98
FOXN3O00409 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXN3O00409 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXN3O00409 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.14■□□□□ 0.98
FOXN3O00409 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.14■□□□□ 0.98
FOXN3O00409 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
FOXN3O00409 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
FOXN3O00409 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.14■□□□□ 0.98
FOXN3O00409 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.14■□□□□ 0.98
FOXN3O00409 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.14■□□□□ 0.98
FOXN3O00409 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.14■□□□□ 0.97
FOXN3O00409 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXN3O00409 AC124283.5-201ENST00000624661 1809 ntBASIC21.14■□□□□ 0.97
FOXN3O00409 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXN3O00409 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.14■□□□□ 0.97
FOXN3O00409 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
FOXN3O00409 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
FOXN3O00409 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXN3O00409 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXN3O00409 HLA-B-256ENST00000639848 1089 ntBASIC21.14■□□□□ 0.97
FOXN3O00409 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXN3O00409 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXN3O00409 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXN3O00409 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXN3O00409 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
FOXN3O00409 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXN3O00409 AC092368.3-202ENST00000574180 1591 ntBASIC21.14■□□□□ 0.97
FOXN3O00409 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
FOXN3O00409 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
FOXN3O00409 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.13■□□□□ 0.97
FOXN3O00409 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXN3O00409 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN3O00409 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN3O00409 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
FOXN3O00409 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
FOXN3O00409 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN3O00409 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN3O00409 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXN3O00409 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXN3O00409 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN3O00409 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.13■□□□□ 0.97
FOXN3O00409 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.13■□□□□ 0.97
FOXN3O00409 AC133041.1-202ENST00000642053 222 ntBASIC21.13■□□□□ 0.97
FOXN3O00409 TFP1-202ENST00000475455 1573 ntBASIC21.13■□□□□ 0.97
FOXN3O00409 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
FOXN3O00409 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
FOXN3O00409 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.13■□□□□ 0.97
FOXN3O00409 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms