Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SMKR1H3BMG3 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SMKR1H3BMG3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC14.41□□□□□ -0.1
SMKR1H3BMG3 TSPY26P-201ENST00000476365 1326 ntBASIC14.41□□□□□ -0.1
SMKR1H3BMG3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC14.4□□□□□ -0.1
SMKR1H3BMG3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms