Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 AL032819.2-201ENST00000624543 2162 ntBASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 CDCA4P2-201ENST00000441182 718 ntBASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 AC080038.1-201ENST00000611274 1154 ntBASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TCRBV7S3A2A0A539 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 TNXA-203ENST00000507684 2038 ntBASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 GPX1P1-201ENST00000388829 606 ntBASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TCRBV7S3A2A0A539 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 AC133552.2-202ENST00000575694 574 ntBASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TCRBV7S3A2A0A539 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 AC004408.2-201ENST00000623613 2777 ntBASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TCRBV7S3A2A0A539 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 LSM12P1-201ENST00000411836 588 ntBASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TCRBV7S3A2A0A539 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.06■□□□□ 0.8
TCRBV7S3A2A0A539 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TCRBV7S3A2A0A539 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TCRBV7S3A2A0A539 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TCRBV7S3A2A0A539 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TCRBV7S3A2A0A539 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms