Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 PRKY-204ENST00000533551 1019 ntBASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 AL121829.2-201ENST00000620908 328 ntBASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 AC073648.6-201ENST00000641589 218 ntBASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TRAV41A0A0B4J266 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 AC128676.1-201ENST00000454392 318 ntBASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 AC018553.1-201ENST00000616682 1458 ntBASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 AC116351.2-201ENST00000606540 1585 ntBASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 AP001271.2-201ENST00000624018 1556 ntBASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 TCF3P1-201ENST00000423021 1937 ntBASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TRAV41A0A0B4J266 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 ITM2C-210ENST00000620962 501 ntBASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 AC112907.3-201ENST00000577781 2400 ntBASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV41A0A0B4J266 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV41A0A0B4J266 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms