Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 TBX5-201ENST00000310346 3825 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 TMPRSS4-219ENST00000616579 3417 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 MITF-203ENST00000328528 4680 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 DDAH1-202ENST00000426972 4017 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF449-202ENST00000370761 2051 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 CLDN8-201ENST00000399899 2068 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 CORIN-208ENST00000508498 3200 ntAPPRIS ALT2 TSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 HNRNPC-222ENST00000555914 1658 ntAPPRIS ALT1 TSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC013444.1-201ENST00000428909 1904 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC078881.1-201ENST00000507023 2161 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 OR10G7-201ENST00000330487 936 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 OR1J2-201ENST00000335302 942 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 KIR2DL4-202ENST00000346587 1026 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RNU6-359P-201ENST00000365466 108 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RNU6-1297P-201ENST00000384415 104 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 MIR185-201ENST00000385288 82 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RNU6-308P-201ENST00000390957 107 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RMDN2-AS1-201ENST00000414365 859 ntTSL 4 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 SNRPFP1-201ENST00000414761 252 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AL354732.1-204ENST00000421020 755 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 DYNLL1P7-201ENST00000429273 258 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 MRLN-202ENST00000430431 495 ntAPPRIS P2 TSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 CYCSP11-201ENST00000436426 315 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC005002.1-201ENST00000447458 540 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 USP12-AS2-201ENST00000452222 279 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 OSBPL10-AS1-207ENST00000455961 411 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 ABCA9-AS1-201ENST00000458677 523 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RN7SL420P-201ENST00000463843 298 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RN7SL418P-201ENST00000473031 287 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC009269.1-203ENST00000496414 828 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC098679.2-201ENST00000513067 365 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 ADI1P2-201ENST00000514945 429 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 Y_RNA.718-201ENST00000517110 102 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 CASC19-203ENST00000523510 575 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AP003532.1-201ENST00000529936 310 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AP000889.2-201ENST00000532684 490 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC090625.2-201ENST00000534165 518 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RASA4-217ENST00000538869 483 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 ACTR3C-205ENST00000539352 570 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 CHURC1-202ENST00000548752 439 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC012186.1-201ENST00000566702 398 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 FRG2HP-201ENST00000568807 832 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RPL23AP86-201ENST00000573796 541 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC136618.2-201ENST00000575091 400 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC007861.1-201ENST00000576671 674 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC103808.6-201ENST00000578035 464 ntTSL 3 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 KPNA2P3-201ENST00000584190 848 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 NRBF2P1-201ENST00000587407 859 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC018462.2-201ENST00000605375 395 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AL109804.1-201ENST00000620777 562 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 SH3D19-204ENST00000427414 2656 ntAPPRIS ALT1 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 IPO7P2-201ENST00000451446 1750 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 PSG8-203ENST00000404209 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AHCYL2-208ENST00000474594 2047 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 CAGE1-202ENST00000338150 2771 ntAPPRIS ALT2 TSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 AC092681.2-201ENST00000565102 3044 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 FAM205BP-202ENST00000399773 4009 ntBASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 SPATA31A3-201ENST00000428649 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 SPATA31A5-201ENST00000437823 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 POU6F2-201ENST00000403058 2335 ntTSL 5 BASIC8.57□□□□□ -1.04
VPS9D1Q9Y2B5 TACC2-226ENST00000513429 4114 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 ST5-237ENST00000530991 3396 ntTSL 2 BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF92-202ENST00000357512 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 TBC1D5-219ENST00000446818 3124 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 PARP9-205ENST00000477522 3128 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 PHACTR2-AS1-201ENST00000450575 1699 ntTSL 5 BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 CTNND2-205ENST00000503622 2982 ntTSL 2 BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 PPFIBP1-207ENST00000537927 5719 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 INTS7-201ENST00000366992 3380 ntTSL 2 BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF615-208ENST00000598071 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 Y_RNA.97-201ENST00000363094 102 ntBASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 Y_RNA.197-201ENST00000364004 102 ntBASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 RNU6-31P-201ENST00000384388 108 ntBASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 SNORD3H-201ENST00000384486 214 ntBASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 TRAV20-201ENST00000390448 406 ntAPPRIS P1 BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC8.56□□□□□ -1.04
VPS9D1Q9Y2B5 SNORD65-201ENST00000391079 73 ntBASIC8.56□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 137 ms