Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AL359502.1-201ENST00000437334 692 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 RPL7P59-201ENST00000447700 943 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ST13P20-201ENST00000447996 1065 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 TDRG1-202ENST00000448433 1015 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CDKN2AIPNLP1-201ENST00000460287 302 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 RN7SL241P-201ENST00000482973 236 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 RPS4XP15-201ENST00000489210 795 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 NMNAT1P4-201ENST00000505598 840 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 MTCYBP44-201ENST00000514835 823 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 DCSTAMP-203ENST00000517991 949 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AP001207.1-201ENST00000524051 481 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AP003499.1-201ENST00000527217 574 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AP003392.2-201ENST00000527269 208 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AP001189.2-201ENST00000527320 189 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AP003721.2-201ENST00000536495 452 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC006581.1-201ENST00000545706 496 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 OR7K1P-201ENST00000546439 926 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC078929.1-201ENST00000547679 502 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 C16orf45-203ENST00000561692 534 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 EIF1P4-201ENST00000572664 335 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC090312.2-201ENST00000582687 378 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 PINLYP-206ENST00000599207 712 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 CARSP1-201ENST00000603171 889 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC018737.1-201ENST00000603900 204 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC068276.1-201ENST00000605793 379 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC068944.2-201ENST00000610373 403 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC135050.6-202ENST00000613584 392 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC025588.4-201ENST00000615802 908 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC016717.3-201ENST00000624730 554 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC010653.3-201ENST00000635332 232 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 HELLS-206ENST00000394045 2699 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 GPD2-203ENST00000409674 2397 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 AC092725.2-201ENST00000567658 1389 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 YME1L1-201ENST00000326799 3994 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 PHF2P2-202ENST00000444553 2865 ntBASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 LINC02408-201ENST00000400306 1766 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 OPALIN-206ENST00000611913 3115 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 SP140-203ENST00000392045 3246 ntAPPRIS P3 TSL 2 BASIC6.03□□□□□ -1.44
CCDC140Q96MF4 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC140Q96MF4 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC6.02□□□□□ -1.44
CCDC140Q96MF4 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.44
CCDC140Q96MF4 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL513523.1-201ENST00000417868 1309 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 IFI44-201ENST00000370747 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 OR2H2-202ENST00000641840 3061 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 Y_RNA.41-201ENST00000362646 102 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 RNU6-374P-201ENST00000364146 108 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 RPSAP42-201ENST00000403415 878 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 OR4F1P-201ENST00000405102 938 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 PKMP3-201ENST00000405497 715 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 RNU6ATAC25P-201ENST00000408798 117 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 HSPE1-202ENST00000409468 570 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 Y_RNA.604-201ENST00000410574 102 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 GSTA10P-201ENST00000412182 576 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC007899.1-201ENST00000412776 775 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC011753.4-201ENST00000417974 311 ntBASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AL590730.1-202ENST00000418875 321 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC140Q96MF4 AC006017.1-201ENST00000424630 673 ntTSL 3 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms