Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 RNU6-932P-201ENST00000391108 106 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 OR4A8-201ENST00000418689 945 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
LIG3P49916 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AL589823.1-201ENST00000429577 183 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AC005189.1-201ENST00000431286 310 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 NANOGP2-201ENST00000435391 727 ntBASIC7.49□□□□□ -1.21
LIG3P49916 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC7.49□□□□□ -1.21
LIG3P49916 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC7.49□□□□□ -1.21
LIG3P49916 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC7.49□□□□□ -1.21
LIG3P49916 AC073387.1-201ENST00000453261 709 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC7.49□□□□□ -1.21
LIG3P49916 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC7.49□□□□□ -1.21
LIG3P49916 AC015820.1-201ENST00000473882 321 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AC008799.2-201ENST00000484429 647 ntBASIC7.49□□□□□ -1.21
LIG3P49916 RPL9P15-201ENST00000491096 532 ntBASIC7.49□□□□□ -1.21
LIG3P49916 FTH1P8-201ENST00000498161 514 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AC023050.1-201ENST00000498198 304 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AC097375.1-201ENST00000507949 488 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC7.49□□□□□ -1.21
LIG3P49916 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC7.49□□□□□ -1.21
LIG3P49916 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.49□□□□□ -1.21
LIG3P49916 AC090888.1-201ENST00000561335 1141 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.49□□□□□ -1.21
LIG3P49916 MIR205HG-210ENST00000603283 455 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AC105129.3-201ENST00000605455 485 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AL445423.1-201ENST00000609941 536 ntBASIC7.49□□□□□ -1.21
LIG3P49916 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC7.49□□□□□ -1.21
LIG3P49916 AC024257.5-201ENST00000612739 531 ntBASIC7.49□□□□□ -1.21
LIG3P49916 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC7.49□□□□□ -1.21
LIG3P49916 AC067852.7-201ENST00000623270 535 ntBASIC7.49□□□□□ -1.21
LIG3P49916 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC7.49□□□□□ -1.21
LIG3P49916 AC183089.2-201ENST00000637931 916 ntBASIC7.49□□□□□ -1.21
LIG3P49916 ATM-229ENST00000639953 587 ntTSL 5 BASIC7.49□□□□□ -1.21
LIG3P49916 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 PWRN1-212ENST00000569908 1435 ntBASIC7.49□□□□□ -1.21
LIG3P49916 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7.49□□□□□ -1.21
LIG3P49916 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC7.49□□□□□ -1.21
LIG3P49916 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC7.49□□□□□ -1.21
LIG3P49916 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC7.49□□□□□ -1.21
LIG3P49916 AL590065.1-201ENST00000603371 4774 ntBASIC7.49□□□□□ -1.21
LIG3P49916 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
LIG3P49916 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
LIG3P49916 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
LIG3P49916 SNORD113-6-201ENST00000363345 75 ntBASIC7.48□□□□□ -1.21
LIG3P49916 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
LIG3P49916 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
LIG3P49916 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC7.48□□□□□ -1.21
LIG3P49916 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC7.48□□□□□ -1.21
LIG3P49916 RPL12P10-201ENST00000413498 498 ntBASIC7.48□□□□□ -1.21
LIG3P49916 PPIAP30-201ENST00000415473 519 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC7.48□□□□□ -1.21
LIG3P49916 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC7.48□□□□□ -1.21
LIG3P49916 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 SLC9B1P4-201ENST00000421957 1288 ntBASIC7.48□□□□□ -1.21
LIG3P49916 AL365203.2-201ENST00000423444 196 ntBASIC7.48□□□□□ -1.21
LIG3P49916 EEF1A1P27-201ENST00000429983 1135 ntBASIC7.48□□□□□ -1.21
LIG3P49916 VDAC2P3-201ENST00000430995 828 ntBASIC7.48□□□□□ -1.21
LIG3P49916 RPL5P4-201ENST00000434805 886 ntBASIC7.48□□□□□ -1.21
LIG3P49916 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
LIG3P49916 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC7.48□□□□□ -1.21
LIG3P49916 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms