Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC034229.6-201ENST00000623704 224 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 LRRC37A4P-202ENST00000581296 5372 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 FAM217B-201ENST00000358293 5152 ntAPPRIS P2 TSL 2 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 CDH7-202ENST00000397968 12231 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 RN7SKP27-201ENST00000410684 333 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 NENFP1-201ENST00000419476 466 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 TRGV7-201ENST00000427089 353 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 RPS27AP6-201ENST00000427962 448 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 LDHBP2-201ENST00000456969 1005 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC109462.1-201ENST00000491087 368 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC092375.1-201ENST00000550410 637 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC141002.1-201ENST00000607025 279 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC009163.6-201ENST00000612367 342 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC130456.6-201ENST00000623745 765 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 MTAP-201ENST00000380172 6122 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 DNAH11-212ENST00000620169 13670 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ERG-201ENST00000288319 4919 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 RN7SKP113-201ENST00000363891 295 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 SNORA51.8-201ENST00000384234 132 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC013442.1-201ENST00000397347 228 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AL035090.1-201ENST00000454835 332 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 RPL7AP28-201ENST00000464513 571 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 PTTG3P-201ENST00000521862 606 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC104687.2-201ENST00000604442 342 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AL118522.2-201ENST00000616045 615 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AL162456.1-201ENST00000634535 2006 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ACOT13-203ENST00000537591 4391 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 MTMR10-201ENST00000435680 4961 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ARID1A-202ENST00000374152 6460 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC112243.1-201ENST00000623949 3851 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 OR2M1P-201ENST00000318104 951 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 TPT1P13-201ENST00000449760 499 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 PDCL3P4-201ENST00000489621 720 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC015720.2-201ENST00000567709 334 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 RBM22P1-201ENST00000578589 1214 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AL392048.1-201ENST00000613946 534 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC132068.1-201ENST00000623805 459 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 PFKM-232ENST00000629846 381 ntTSL 4 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 XIST-206ENST00000434839 2865 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC107980.1-201ENST00000558671 3355 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 PRDM11-206ENST00000622142 10730 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 DYNC1I2P1-201ENST00000435916 1838 ntBASIC5.74□□□□□ -1.49
VPS13AQ96RL7 CORO2A-201ENST00000343933 5635 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 DOCK3-201ENST00000266037 8755 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 SEL1L-201ENST00000336735 7925 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 CYB5R4-202ENST00000369681 9252 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 SYNE1-206ENST00000367253 5189 ntTSL 5 BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 SH3GLB1-205ENST00000616170 6456 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VPS13AQ96RL7 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 SDK2-201ENST00000392650 10723 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
VPS13AQ96RL7 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms