Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 FAT4-201ENST00000335110 9669 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 NEK2P4-201ENST00000425793 1329 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL512310.3-201ENST00000547023 1335 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 BIN2P1-201ENST00000504996 1530 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 WDR36-203ENST00000506538 7048 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 DROSHA-220ENST00000513349 4681 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 SNORA70.2-201ENST00000364506 135 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 COX6CP17-201ENST00000421389 185 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC073594.1-201ENST00000462065 364 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC008629.2-201ENST00000503783 483 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL110118.1-201ENST00000553543 400 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS13AQ96RL7 AL133243.4-201ENST00000623116 3109 ntBASIC5.77□□□□□ -1.49
VPS13AQ96RL7 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 RAB9BP1-201ENST00000519581 626 ntBASIC5.76□□□□□ -1.49
VPS13AQ96RL7 OR6M2P-201ENST00000529831 871 ntBASIC5.76□□□□□ -1.49
VPS13AQ96RL7 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 IMMTP1-201ENST00000435590 2219 ntBASIC5.76□□□□□ -1.49
VPS13AQ96RL7 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 SIPA1L2-201ENST00000262861 6555 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 PAX6-231ENST00000606377 6901 ntAPPRIS P4 TSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 AP002370.1-201ENST00000528055 1602 ntBASIC5.76□□□□□ -1.49
VPS13AQ96RL7 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 AL590139.1-201ENST00000416267 400 ntBASIC5.76□□□□□ -1.49
VPS13AQ96RL7 RPS4XP5-201ENST00000419038 768 ntBASIC5.76□□□□□ -1.49
VPS13AQ96RL7 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 AC087269.2-201ENST00000641764 975 ntBASIC5.76□□□□□ -1.49
VPS13AQ96RL7 NRP1-208ENST00000395995 5826 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 HLCS-202ENST00000399120 6466 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 SEMA6D-203ENST00000355997 5908 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS13AQ96RL7 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 U3.36-201ENST00000408418 213 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 GTF2IP2-201ENST00000424290 697 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC073648.4-201ENST00000442655 781 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 RN7SL870P-201ENST00000460111 296 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AL359704.2-201ENST00000604335 521 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AP002799.1-201ENST00000623552 423 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 TRPM3-213ENST00000396285 4701 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 MELK-207ENST00000536860 2342 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AL035555.1-201ENST00000404462 1790 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC068870.1-201ENST00000563737 2455 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AL590240.2-201ENST00000413370 894 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 OR5M12P-201ENST00000423388 929 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC026979.1-201ENST00000492525 396 ntBASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.75□□□□□ -1.49
VPS13AQ96RL7 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms